miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 3' -64.9 NC_005264.1 + 66689 1.11 0.000448
Target:  5'- aCCGGCGCCGGGCGGGGGGCGUACUACg -3'
miRNA:   3'- -GGCCGCGGCCCGCCCCCCGCAUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 109623 0.75 0.154849
Target:  5'- aUGGCG-UGGGCGGGGGGCGcgACgguUGCa -3'
miRNA:   3'- gGCCGCgGCCCGCCCCCCGCa-UG---AUG- -5'
24464 3' -64.9 NC_005264.1 + 120717 0.74 0.178403
Target:  5'- gCCGGCgGUCGGGCGGaGGacggugccGGCG-ACUGCg -3'
miRNA:   3'- -GGCCG-CGGCCCGCC-CC--------CCGCaUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 162230 0.74 0.191336
Target:  5'- gCGG-GCCGGcGgGGGGGGgGgggGCUACg -3'
miRNA:   3'- gGCCgCGGCC-CgCCCCCCgCa--UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 43203 0.74 0.191336
Target:  5'- gCGG-GCCGGcGgGGGGGGgGgggGCUACg -3'
miRNA:   3'- gGCCgCGGCC-CgCCCCCCgCa--UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 151858 0.72 0.268838
Target:  5'- uCCGGCGgCGacacGUGGGGGGCGU-CUucGCg -3'
miRNA:   3'- -GGCCGCgGCc---CGCCCCCCGCAuGA--UG- -5'
24464 3' -64.9 NC_005264.1 + 37594 0.71 0.280901
Target:  5'- gCGGCgGCCGcGGCGGGGGGUcaaaggACg -3'
miRNA:   3'- gGCCG-CGGC-CCGCCCCCCGcauga-UG- -5'
24464 3' -64.9 NC_005264.1 + 156621 0.71 0.280901
Target:  5'- gCGGCgGCCGcGGCGGGGGGUcaaaggACg -3'
miRNA:   3'- gGCCG-CGGC-CCGCCCCCCGcauga-UG- -5'
24464 3' -64.9 NC_005264.1 + 160452 0.71 0.29339
Target:  5'- gCCGGCGCCGGGCuccuGcGGGCG-ACgGCc -3'
miRNA:   3'- -GGCCGCGGCCCGc---CcCCCGCaUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 41425 0.71 0.29339
Target:  5'- gCCGGCGCCGGGCuccuGcGGGCG-ACgGCc -3'
miRNA:   3'- -GGCCGCGGCCCGc---CcCCCGCaUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 127318 0.7 0.326493
Target:  5'- -aGGCGCCcguGGGCGacGGGGGCac-CUGCg -3'
miRNA:   3'- ggCCGCGG---CCCGC--CCCCCGcauGAUG- -5'
24464 3' -64.9 NC_005264.1 + 82380 0.7 0.326493
Target:  5'- uCCGGUGCCGGGCGcaGGGCuagACg-- -3'
miRNA:   3'- -GGCCGCGGCCCGCccCCCGca-UGaug -5'
24464 3' -64.9 NC_005264.1 + 8291 0.7 0.326493
Target:  5'- -aGGCGCCcguGGGCGacGGGGGCac-CUGCg -3'
miRNA:   3'- ggCCGCGG---CCCGC--CCCCCGcauGAUG- -5'
24464 3' -64.9 NC_005264.1 + 13798 0.7 0.333438
Target:  5'- aCGGUGaacCCGGGCaGGGGGCuGUGggACg -3'
miRNA:   3'- gGCCGC---GGCCCGcCCCCCG-CAUgaUG- -5'
24464 3' -64.9 NC_005264.1 + 39079 0.7 0.340489
Target:  5'- cCCGGaCGCCGgcucGGCGGGcagcGGCGUcuggaccaGCUGCu -3'
miRNA:   3'- -GGCC-GCGGC----CCGCCCc---CCGCA--------UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 12538 0.7 0.340489
Target:  5'- gCCGGUa--GGaGCGGGGGGCGUucGCcGCg -3'
miRNA:   3'- -GGCCGcggCC-CGCCCCCCGCA--UGaUG- -5'
24464 3' -64.9 NC_005264.1 + 40789 0.7 0.340489
Target:  5'- gCGGCGCUGcaaacuGCGGGGGGC--GCUGg -3'
miRNA:   3'- gGCCGCGGCc-----CGCCCCCCGcaUGAUg -5'
24464 3' -64.9 NC_005264.1 + 38341 0.7 0.340489
Target:  5'- cCUGGCcgugauGCUGGGCGGcGGGGCGg----- -3'
miRNA:   3'- -GGCCG------CGGCCCGCC-CCCCGCaugaug -5'
24464 3' -64.9 NC_005264.1 + 159815 0.7 0.340489
Target:  5'- gCGGCGCUGcaaacuGCGGGGGGC--GCUGg -3'
miRNA:   3'- gGCCGCGGCc-----CGCCCCCCGcaUGAUg -5'
24464 3' -64.9 NC_005264.1 + 157368 0.7 0.340489
Target:  5'- cCUGGCcgugauGCUGGGCGGcGGGGCGg----- -3'
miRNA:   3'- -GGCCG------CGGCCCGCC-CCCCGCaugaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.