miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 3' -64.9 NC_005264.1 + 56897 0.67 0.493725
Target:  5'- aCCGGgaaCUGGGCgagcauuauGGGGcGGCGUACgUGCg -3'
miRNA:   3'- -GGCCgc-GGCCCG---------CCCC-CCGCAUG-AUG- -5'
24464 3' -64.9 NC_005264.1 + 48640 0.67 0.488387
Target:  5'- gCCGGCGUCGguuggguauuccgcuGGCacGGGGGGCGa----- -3'
miRNA:   3'- -GGCCGCGGC---------------CCG--CCCCCCGCaugaug -5'
24464 3' -64.9 NC_005264.1 + 22745 0.67 0.483075
Target:  5'- cCCGGUGCUGGGCGaagcgauagcggcGGGcaaugaggggcgcGGCGacACUGCu -3'
miRNA:   3'- -GGCCGCGGCCCGC-------------CCC-------------CCGCa-UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 3622 0.67 0.476038
Target:  5'- -gGGCGCUguGGGCGGGGuGGgGguuuCUGg -3'
miRNA:   3'- ggCCGCGG--CCCGCCCC-CCgCau--GAUg -5'
24464 3' -64.9 NC_005264.1 + 149739 0.67 0.467313
Target:  5'- gUGGCGCC-GGCGGGcagaGGCGagcCUACa -3'
miRNA:   3'- gGCCGCGGcCCGCCCc---CCGCau-GAUG- -5'
24464 3' -64.9 NC_005264.1 + 13563 0.67 0.467313
Target:  5'- gCGGCG-CGGGCGGGaccggggaaGGGCGgaACgaagACg -3'
miRNA:   3'- gGCCGCgGCCCGCCC---------CCCGCa-UGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 132590 0.67 0.467313
Target:  5'- gCGGCG-CGGGCGGGaccggggaaGGGCGgaACgaagACg -3'
miRNA:   3'- gGCCGCgGCCCGCCC---------CCCGCa-UGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 5382 0.67 0.464711
Target:  5'- aCCGGCGCUcgauugcuugccagGGGCcagcaGGGCGUACgcgGCa -3'
miRNA:   3'- -GGCCGCGG--------------CCCGccc--CCCGCAUGa--UG- -5'
24464 3' -64.9 NC_005264.1 + 124409 0.67 0.464711
Target:  5'- aCCGGCGCUcgauugcuugccagGGGCcagcaGGGCGUACgcgGCa -3'
miRNA:   3'- -GGCCGCGG--------------CCCGccc--CCCGCAUGa--UG- -5'
24464 3' -64.9 NC_005264.1 + 54701 0.68 0.440806
Target:  5'- aCCGGCGCCgaggacaGGGUGGGaaGCGUggcGCUcACg -3'
miRNA:   3'- -GGCCGCGG-------CCCGCCCccCGCA---UGA-UG- -5'
24464 3' -64.9 NC_005264.1 + 124307 0.68 0.433272
Target:  5'- gCCGGacgGCgGGGCGGcggcugacccguGGGGCGggcgACUGg -3'
miRNA:   3'- -GGCCg--CGgCCCGCC------------CCCCGCa---UGAUg -5'
24464 3' -64.9 NC_005264.1 + 5280 0.68 0.433272
Target:  5'- gCCGGacgGCgGGGCGGcggcugacccguGGGGCGggcgACUGg -3'
miRNA:   3'- -GGCCg--CGgCCCGCC------------CCCCGCa---UGAUg -5'
24464 3' -64.9 NC_005264.1 + 142435 0.68 0.424989
Target:  5'- gCGGCGCggucuacuuucgUGGuuGCGGGGGGaauUACUGCg -3'
miRNA:   3'- gGCCGCG------------GCC--CGCCCCCCgc-AUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 103681 0.68 0.413553
Target:  5'- aCUGGCaGCUGGGCGaGGGGGaaguugagggccaGUGgaGCg -3'
miRNA:   3'- -GGCCG-CGGCCCGC-CCCCCg------------CAUgaUG- -5'
24464 3' -64.9 NC_005264.1 + 21574 0.69 0.385036
Target:  5'- gCCGGCGCCGagaccGUGGaaaGGGUGUGCcGCg -3'
miRNA:   3'- -GGCCGCGGCc----CGCCc--CCCGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 153248 0.69 0.369766
Target:  5'- uUCGGCGCauGG-GGGGGGacUACUGCg -3'
miRNA:   3'- -GGCCGCGgcCCgCCCCCCgcAUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 95337 0.69 0.369766
Target:  5'- gCCgGGCGCCGcgaaacggacucGGCGGGGcGGCGgcCcgGCc -3'
miRNA:   3'- -GG-CCGCGGC------------CCGCCCC-CCGCauGa-UG- -5'
24464 3' -64.9 NC_005264.1 + 127403 0.7 0.347649
Target:  5'- aCCGGCGCCGGaCGcGGcGCGUugaaGCUGCc -3'
miRNA:   3'- -GGCCGCGGCCcGCcCCcCGCA----UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 8376 0.7 0.347649
Target:  5'- aCCGGCGCCGGaCGcGGcGCGUugaaGCUGCc -3'
miRNA:   3'- -GGCCGCGGCCcGCcCCcCGCA----UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 131565 0.7 0.340489
Target:  5'- gCCGGUa--GGaGCGGGGGGCGUucGCcGCg -3'
miRNA:   3'- -GGCCGcggCC-CGCCCCCCGCA--UGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.