miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 3' -64.9 NC_005264.1 + 2884 0.66 0.548434
Target:  5'- aCCGGgGCgCGGcGCGGcGGGGaggGCgacgGCg -3'
miRNA:   3'- -GGCCgCG-GCC-CGCC-CCCCgcaUGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 3488 0.67 0.511707
Target:  5'- gCCGcCGCaCGcGGCGGGGGGCa------ -3'
miRNA:   3'- -GGCcGCG-GC-CCGCCCCCCGcaugaug -5'
24464 3' -64.9 NC_005264.1 + 3622 0.67 0.476038
Target:  5'- -gGGCGCUguGGGCGGGGuGGgGguuuCUGg -3'
miRNA:   3'- ggCCGCGG--CCCGCCCC-CCgCau--GAUg -5'
24464 3' -64.9 NC_005264.1 + 5280 0.68 0.433272
Target:  5'- gCCGGacgGCgGGGCGGcggcugacccguGGGGCGggcgACUGg -3'
miRNA:   3'- -GGCCg--CGgCCCGCC------------CCCCGCa---UGAUg -5'
24464 3' -64.9 NC_005264.1 + 5382 0.67 0.464711
Target:  5'- aCCGGCGCUcgauugcuugccagGGGCcagcaGGGCGUACgcgGCa -3'
miRNA:   3'- -GGCCGCGG--------------CCCGccc--CCCGCAUGa--UG- -5'
24464 3' -64.9 NC_005264.1 + 7892 0.66 0.580281
Target:  5'- gCGGCgucggaggucuccucGCCGGaGUacuGGGGGGaCGUaacGCUGCc -3'
miRNA:   3'- gGCCG---------------CGGCC-CG---CCCCCC-GCA---UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 8291 0.7 0.326493
Target:  5'- -aGGCGCCcguGGGCGacGGGGGCac-CUGCg -3'
miRNA:   3'- ggCCGCGG---CCCGC--CCCCCGcauGAUG- -5'
24464 3' -64.9 NC_005264.1 + 8376 0.7 0.347649
Target:  5'- aCCGGCGCCGGaCGcGGcGCGUugaaGCUGCc -3'
miRNA:   3'- -GGCCGCGGCCcGCcCCcCGCA----UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 12538 0.7 0.340489
Target:  5'- gCCGGUa--GGaGCGGGGGGCGUucGCcGCg -3'
miRNA:   3'- -GGCCGcggCC-CGCCCCCCGCA--UGaUG- -5'
24464 3' -64.9 NC_005264.1 + 13563 0.67 0.467313
Target:  5'- gCGGCG-CGGGCGGGaccggggaaGGGCGgaACgaagACg -3'
miRNA:   3'- gGCCGCgGCCCGCCC---------CCCGCa-UGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 13798 0.7 0.333438
Target:  5'- aCGGUGaacCCGGGCaGGGGGCuGUGggACg -3'
miRNA:   3'- gGCCGC---GGCCCGcCCCCCG-CAUgaUG- -5'
24464 3' -64.9 NC_005264.1 + 14053 0.67 0.502681
Target:  5'- gCGGgGCCGGGUGGGaa-CGUGC-ACg -3'
miRNA:   3'- gGCCgCGGCCCGCCCcccGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 16570 0.67 0.511707
Target:  5'- gCGGCGCCgGGGCGGc-GGCGcACa-- -3'
miRNA:   3'- gGCCGCGG-CCCGCCccCCGCaUGaug -5'
24464 3' -64.9 NC_005264.1 + 19425 0.66 0.548434
Target:  5'- -aGGCGCCGGGUGuggccgcGGGGCGcgGgUGg -3'
miRNA:   3'- ggCCGCGGCCCGCc------CCCCGCa-UgAUg -5'
24464 3' -64.9 NC_005264.1 + 21574 0.69 0.385036
Target:  5'- gCCGGCGCCGagaccGUGGaaaGGGUGUGCcGCg -3'
miRNA:   3'- -GGCCGCGGCc----CGCCc--CCCGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 22745 0.67 0.483075
Target:  5'- cCCGGUGCUGGGCGaagcgauagcggcGGGcaaugaggggcgcGGCGacACUGCu -3'
miRNA:   3'- -GGCCGCGGCCCGC-------------CCC-------------CCGCa-UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 25090 0.66 0.529954
Target:  5'- uUCGGCGCCGGGgacaaGcGGGGCagACUuaGCg -3'
miRNA:   3'- -GGCCGCGGCCCg----CcCCCCGcaUGA--UG- -5'
24464 3' -64.9 NC_005264.1 + 25612 0.66 0.548434
Target:  5'- gCCGGCGuuGcggaacacggcGGCGGuGGGGcCGcGCUccGCg -3'
miRNA:   3'- -GGCCGCggC-----------CCGCC-CCCC-GCaUGA--UG- -5'
24464 3' -64.9 NC_005264.1 + 25713 0.66 0.548434
Target:  5'- uUGGCG-CGGGCGGcagcGGuGCGUACUc- -3'
miRNA:   3'- gGCCGCgGCCCGCCc---CC-CGCAUGAug -5'
24464 3' -64.9 NC_005264.1 + 37594 0.71 0.280901
Target:  5'- gCGGCgGCCGcGGCGGGGGGUcaaaggACg -3'
miRNA:   3'- gGCCG-CGGC-CCGCCCCCCGcauga-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.