miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 3' -64.9 NC_005264.1 + 122515 0.67 0.511707
Target:  5'- gCCGcCGCaCGcGGCGGGGGGCa------ -3'
miRNA:   3'- -GGCcGCG-GC-CCGCCCCCCGcaugaug -5'
24464 3' -64.9 NC_005264.1 + 124307 0.68 0.433272
Target:  5'- gCCGGacgGCgGGGCGGcggcugacccguGGGGCGggcgACUGg -3'
miRNA:   3'- -GGCCg--CGgCCCGCC------------CCCCGCa---UGAUg -5'
24464 3' -64.9 NC_005264.1 + 124409 0.67 0.464711
Target:  5'- aCCGGCGCUcgauugcuugccagGGGCcagcaGGGCGUACgcgGCa -3'
miRNA:   3'- -GGCCGCGG--------------CCCGccc--CCCGCAUGa--UG- -5'
24464 3' -64.9 NC_005264.1 + 132590 0.67 0.467313
Target:  5'- gCGGCG-CGGGCGGGaccggggaaGGGCGgaACgaagACg -3'
miRNA:   3'- gGCCGCgGCCCGCCC---------CCCGCa-UGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 3622 0.67 0.476038
Target:  5'- -gGGCGCUguGGGCGGGGuGGgGguuuCUGg -3'
miRNA:   3'- ggCCGCGG--CCCGCCCC-CCgCau--GAUg -5'
24464 3' -64.9 NC_005264.1 + 22745 0.67 0.483075
Target:  5'- cCCGGUGCUGGGCGaagcgauagcggcGGGcaaugaggggcgcGGCGacACUGCu -3'
miRNA:   3'- -GGCCGCGGCCCGC-------------CCC-------------CCGCa-UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 14053 0.67 0.502681
Target:  5'- gCGGgGCCGGGUGGGaa-CGUGC-ACg -3'
miRNA:   3'- gGCCgCGGCCCGCCCcccGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 16570 0.67 0.511707
Target:  5'- gCGGCGCCgGGGCGGc-GGCGcACa-- -3'
miRNA:   3'- gGCCGCGG-CCCGCCccCCGCaUGaug -5'
24464 3' -64.9 NC_005264.1 + 49597 0.67 0.511707
Target:  5'- gCCGGCGaCCaGGacgaCGGGGGGCGc----- -3'
miRNA:   3'- -GGCCGC-GGcCC----GCCCCCCGCaugaug -5'
24464 3' -64.9 NC_005264.1 + 142435 0.68 0.424989
Target:  5'- gCGGCGCggucuacuuucgUGGuuGCGGGGGGaauUACUGCg -3'
miRNA:   3'- gGCCGCG------------GCC--CGCCCCCCgc-AUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 21574 0.69 0.385036
Target:  5'- gCCGGCGCCGagaccGUGGaaaGGGUGUGCcGCg -3'
miRNA:   3'- -GGCCGCGGCc----CGCCc--CCCGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 127403 0.7 0.347649
Target:  5'- aCCGGCGCCGGaCGcGGcGCGUugaaGCUGCc -3'
miRNA:   3'- -GGCCGCGGCCcGCcCCcCGCA----UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 156621 0.71 0.280901
Target:  5'- gCGGCgGCCGcGGCGGGGGGUcaaaggACg -3'
miRNA:   3'- gGCCG-CGGC-CCGCCCCCCGcauga-UG- -5'
24464 3' -64.9 NC_005264.1 + 160452 0.71 0.29339
Target:  5'- gCCGGCGCCGGGCuccuGcGGGCG-ACgGCc -3'
miRNA:   3'- -GGCCGCGGCCCGc---CcCCCGCaUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 127318 0.7 0.326493
Target:  5'- -aGGCGCCcguGGGCGacGGGGGCac-CUGCg -3'
miRNA:   3'- ggCCGCGG---CCCGC--CCCCCGcauGAUG- -5'
24464 3' -64.9 NC_005264.1 + 13798 0.7 0.333438
Target:  5'- aCGGUGaacCCGGGCaGGGGGCuGUGggACg -3'
miRNA:   3'- gGCCGC---GGCCCGcCCCCCG-CAUgaUG- -5'
24464 3' -64.9 NC_005264.1 + 159815 0.7 0.340489
Target:  5'- gCGGCGCUGcaaacuGCGGGGGGC--GCUGg -3'
miRNA:   3'- gGCCGCGGCc-----CGCCCCCCGcaUGAUg -5'
24464 3' -64.9 NC_005264.1 + 131565 0.7 0.340489
Target:  5'- gCCGGUa--GGaGCGGGGGGCGUucGCcGCg -3'
miRNA:   3'- -GGCCGcggCC-CGCCCCCCGCA--UGaUG- -5'
24464 3' -64.9 NC_005264.1 + 157368 0.7 0.340489
Target:  5'- cCUGGCcgugauGCUGGGCGGcGGGGCGg----- -3'
miRNA:   3'- -GGCCG------CGGCCCGCC-CCCCGCaugaug -5'
24464 3' -64.9 NC_005264.1 + 158106 0.7 0.340489
Target:  5'- cCCGGaCGCCGgcucGGCGGGcagcGGCGUcuggaccaGCUGCu -3'
miRNA:   3'- -GGCC-GCGGC----CCGCCCc---CCGCA--------UGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.