miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 5' -54.3 NC_005264.1 + 141459 0.66 0.956715
Target:  5'- cGAG--GCGAGCGgCGGgGCCUcuuuCCa -3'
miRNA:   3'- -CUCguUGUUCGCgGCCgCGGAuuu-GG- -5'
24464 5' -54.3 NC_005264.1 + 67305 0.66 0.956715
Target:  5'- aGGGUAuc--GCGgCGGCGCCUu--CCa -3'
miRNA:   3'- -CUCGUuguuCGCgGCCGCGGAuuuGG- -5'
24464 5' -54.3 NC_005264.1 + 142988 0.66 0.956715
Target:  5'- cGGGCAugAGGCG--GGCGUggGGACCc -3'
miRNA:   3'- -CUCGUugUUCGCggCCGCGgaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 130510 0.66 0.956715
Target:  5'- cAGgAACuuaAAGaCGCCGGCGagaUAGACCu -3'
miRNA:   3'- cUCgUUG---UUC-GCGGCCGCgg-AUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 74391 0.66 0.956715
Target:  5'- uGGGUAGCGGGCGUCgaacagguucuGGCuGCggGAGCCc -3'
miRNA:   3'- -CUCGUUGUUCGCGG-----------CCG-CGgaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 85907 0.66 0.956715
Target:  5'- -cGUAacGCAGGCGCUGacucugaccGCGUCUGAgGCCa -3'
miRNA:   3'- cuCGU--UGUUCGCGGC---------CGCGGAUU-UGG- -5'
24464 5' -54.3 NC_005264.1 + 46455 0.66 0.956715
Target:  5'- -uGCGGCuuuuGCG-CGGCGCuCUuuGCCu -3'
miRNA:   3'- cuCGUUGuu--CGCgGCCGCG-GAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 131990 0.66 0.956715
Target:  5'- cGGGCGGC--GCGCCGcCGCCgacGACg -3'
miRNA:   3'- -CUCGUUGuuCGCGGCcGCGGau-UUGg -5'
24464 5' -54.3 NC_005264.1 + 139747 0.66 0.956715
Target:  5'- cGGGCGGCAgacaacgcgGGacauGCCGGCGUCUcccgguACCc -3'
miRNA:   3'- -CUCGUUGU---------UCg---CGGCCGCGGAuu----UGG- -5'
24464 5' -54.3 NC_005264.1 + 114976 0.66 0.956715
Target:  5'- uAGCGcgaacuugagGCGcGUGCCGGCGCUUGcaaAACa -3'
miRNA:   3'- cUCGU----------UGUuCGCGGCCGCGGAU---UUGg -5'
24464 5' -54.3 NC_005264.1 + 125520 0.66 0.956715
Target:  5'- cGGCcauCGAGgGCCGGUaGCCggucuuGCCg -3'
miRNA:   3'- cUCGuu-GUUCgCGGCCG-CGGauu---UGG- -5'
24464 5' -54.3 NC_005264.1 + 6493 0.66 0.956715
Target:  5'- cGGCcauCGAGgGCCGGUaGCCggucuuGCCg -3'
miRNA:   3'- cUCGuu-GUUCgCGGCCG-CGGauu---UGG- -5'
24464 5' -54.3 NC_005264.1 + 136346 0.66 0.956715
Target:  5'- aGAGauauuauACGGGCGCUgGGCGCU---GCCg -3'
miRNA:   3'- -CUCgu-----UGUUCGCGG-CCGCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 2142 0.66 0.954372
Target:  5'- cGAGCAuuaacccauGCGAGCauagaccccuGCgGGCaugagaucauugcgaGCCUAAACCc -3'
miRNA:   3'- -CUCGU---------UGUUCG----------CGgCCG---------------CGGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 121169 0.66 0.954372
Target:  5'- cGAGCAuuaacccauGCGAGCauagaccccuGCgGGCaugagaucauugcgaGCCUAAACCc -3'
miRNA:   3'- -CUCGU---------UGUUCG----------CGgCCG---------------CGGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 26480 0.66 0.952763
Target:  5'- uAGUAGacaGAGgGCCcgugcGGCGCC-GAACCa -3'
miRNA:   3'- cUCGUUg--UUCgCGG-----CCGCGGaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 54126 0.66 0.952763
Target:  5'- aGAGUu-CGAgcGCGCCGGgGUCgguGCCg -3'
miRNA:   3'- -CUCGuuGUU--CGCGGCCgCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 49360 0.66 0.952763
Target:  5'- -cGCGGCAAGa-UCGGCGCgUAuuGCCu -3'
miRNA:   3'- cuCGUUGUUCgcGGCCGCGgAUu-UGG- -5'
24464 5' -54.3 NC_005264.1 + 60840 0.66 0.952763
Target:  5'- cAGCuugGCGucGGCGUCGGCGCgUGcGCg -3'
miRNA:   3'- cUCGu--UGU--UCGCGGCCGCGgAUuUGg -5'
24464 5' -54.3 NC_005264.1 + 86873 0.66 0.948575
Target:  5'- gGGGCAaugcuuuccucACAGGCGgCGGcCGCgauagAGACCa -3'
miRNA:   3'- -CUCGU-----------UGUUCGCgGCC-GCGga---UUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.