miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 5' -54.3 NC_005264.1 + 75710 0.66 0.93948
Target:  5'- -cGCGAagacugguGCGCCccgcgGGCGCCggAGGCCa -3'
miRNA:   3'- cuCGUUguu-----CGCGG-----CCGCGGa-UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 58504 0.66 0.943692
Target:  5'- uGAGCGGCAccuccucguaagcGGCGUCG-CGCCUcaAggUCa -3'
miRNA:   3'- -CUCGUUGU-------------UCGCGGCcGCGGA--UuuGG- -5'
24464 5' -54.3 NC_005264.1 + 86873 0.66 0.948575
Target:  5'- gGGGCAaugcuuuccucACAGGCGgCGGcCGCgauagAGACCa -3'
miRNA:   3'- -CUCGU-----------UGUUCGCgGCC-GCGga---UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 136131 0.66 0.944148
Target:  5'- -cGCGGgGAGCGCauGCGCCccGACa -3'
miRNA:   3'- cuCGUUgUUCGCGgcCGCGGauUUGg -5'
24464 5' -54.3 NC_005264.1 + 66604 0.66 0.93948
Target:  5'- uGGGCuGCGccGCguuGCCGGCGCCgucgcGGCCc -3'
miRNA:   3'- -CUCGuUGUu-CG---CGGCCGCGGau---UUGG- -5'
24464 5' -54.3 NC_005264.1 + 26120 0.66 0.944148
Target:  5'- -cGCGGCucguGGCG-CGGCGCCgagagaauggcGAGCCc -3'
miRNA:   3'- cuCGUUGu---UCGCgGCCGCGGa----------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 89521 0.66 0.944148
Target:  5'- aGAGCGGCAGGCGgCCuauugauuGGCGC--GGGCa -3'
miRNA:   3'- -CUCGUUGUUCGC-GG--------CCGCGgaUUUGg -5'
24464 5' -54.3 NC_005264.1 + 93490 0.66 0.944148
Target:  5'- aGGCGcuGCuGGCgGCCGGCGCgUcguucccuucGGACCu -3'
miRNA:   3'- cUCGU--UGuUCG-CGGCCGCGgA----------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 146763 0.66 0.944148
Target:  5'- cGGCAacaGCAAGCGCCGcGCGgCg----- -3'
miRNA:   3'- cUCGU---UGUUCGCGGC-CGCgGauuugg -5'
24464 5' -54.3 NC_005264.1 + 136445 0.66 0.948143
Target:  5'- aGAGCAugGGcgcugaggccGCGCucagagaCGGCGCCgcgcAGCCu -3'
miRNA:   3'- -CUCGUugUU----------CGCG-------GCCGCGGau--UUGG- -5'
24464 5' -54.3 NC_005264.1 + 25007 0.66 0.941376
Target:  5'- cGGCu-CAGGCGCUgcaugccucuccugaGGCGCCc-GGCCa -3'
miRNA:   3'- cUCGuuGUUCGCGG---------------CCGCGGauUUGG- -5'
24464 5' -54.3 NC_005264.1 + 6651 0.66 0.944148
Target:  5'- --cCGACAuauaGCCGGCGCCgccacGCCg -3'
miRNA:   3'- cucGUUGUucg-CGGCCGCGGauu--UGG- -5'
24464 5' -54.3 NC_005264.1 + 57890 0.66 0.948575
Target:  5'- uGGGCcACGAG-GCuCGGCGCUUGgcacGGCUg -3'
miRNA:   3'- -CUCGuUGUUCgCG-GCCGCGGAU----UUGG- -5'
24464 5' -54.3 NC_005264.1 + 2995 0.66 0.944148
Target:  5'- cGAGCGcCGAcuGgGCCGGCGgCUcgGCUc -3'
miRNA:   3'- -CUCGUuGUU--CgCGGCCGCgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 36515 0.66 0.944148
Target:  5'- cGGCcucGACGAG-GCgGGCGCagGAGCCa -3'
miRNA:   3'- cUCG---UUGUUCgCGgCCGCGgaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 17361 0.66 0.93948
Target:  5'- cGGCAGCuGGCGgCGGCGCgguCUGuguacgugcGCCg -3'
miRNA:   3'- cUCGUUGuUCGCgGCCGCG---GAUu--------UGG- -5'
24464 5' -54.3 NC_005264.1 + 88738 0.66 0.93948
Target:  5'- -cGCGAC-AGCGUCGaccGCGCCaUGuacGACCa -3'
miRNA:   3'- cuCGUUGuUCGCGGC---CGCGG-AU---UUGG- -5'
24464 5' -54.3 NC_005264.1 + 135519 0.66 0.938999
Target:  5'- cGGCGACGggacaauAGUGCuCGGgGaCCUAggGACCg -3'
miRNA:   3'- cUCGUUGU-------UCGCG-GCCgC-GGAU--UUGG- -5'
24464 5' -54.3 NC_005264.1 + 63395 0.66 0.948575
Target:  5'- -uGUGGuCAAGCGCCGGagauGCCaaagcAAACCg -3'
miRNA:   3'- cuCGUU-GUUCGCGGCCg---CGGa----UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 108509 0.66 0.93948
Target:  5'- uGGGguAC-GGCGUCGuGCGCCaccACCg -3'
miRNA:   3'- -CUCguUGuUCGCGGC-CGCGGauuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.