miRNA display CGI


Results 21 - 40 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 5' -54.3 NC_005264.1 + 131605 0.66 0.948575
Target:  5'- gGAGCGGCGcGCGUgGGCGCg------ -3'
miRNA:   3'- -CUCGUUGUuCGCGgCCGCGgauuugg -5'
24464 5' -54.3 NC_005264.1 + 133275 0.66 0.948575
Target:  5'- cAGCGACGGG-GCUGGCGa-UAAACa -3'
miRNA:   3'- cUCGUUGUUCgCGGCCGCggAUUUGg -5'
24464 5' -54.3 NC_005264.1 + 1303 0.66 0.948575
Target:  5'- uGAGU--CGGGCGauguaCGGCGaucCCUAAACCc -3'
miRNA:   3'- -CUCGuuGUUCGCg----GCCGC---GGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 63395 0.66 0.948575
Target:  5'- -uGUGGuCAAGCGCCGGagauGCCaaagcAAACCg -3'
miRNA:   3'- cuCGUU-GUUCGCGGCCg---CGGa----UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 57890 0.66 0.948575
Target:  5'- uGGGCcACGAG-GCuCGGCGCUUGgcacGGCUg -3'
miRNA:   3'- -CUCGuUGUUCgCG-GCCGCGGAU----UUGG- -5'
24464 5' -54.3 NC_005264.1 + 86873 0.66 0.948575
Target:  5'- gGGGCAaugcuuuccucACAGGCGgCGGcCGCgauagAGACCa -3'
miRNA:   3'- -CUCGU-----------UGUUCGCgGCC-GCGga---UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 78611 0.66 0.948575
Target:  5'- cGGUAgGCAAGCuCgCGGCGCCUcuucuguuAACCg -3'
miRNA:   3'- cUCGU-UGUUCGcG-GCCGCGGAu-------UUGG- -5'
24464 5' -54.3 NC_005264.1 + 120330 0.66 0.948575
Target:  5'- uGAGU--CGGGCGauguaCGGCGaucCCUAAACCc -3'
miRNA:   3'- -CUCGuuGUUCGCg----GCCGC---GGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 137393 0.66 0.948575
Target:  5'- cGGCGACAAGCaGUucgaggaGGC-CCUGGACUg -3'
miRNA:   3'- cUCGUUGUUCG-CGg------CCGcGGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 3954 0.66 0.948575
Target:  5'- aGAGgAACGuccuggccGCGCCGGCcGgCUuuACCg -3'
miRNA:   3'- -CUCgUUGUu-------CGCGGCCG-CgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 136445 0.66 0.948143
Target:  5'- aGAGCAugGGcgcugaggccGCGCucagagaCGGCGCCgcgcAGCCu -3'
miRNA:   3'- -CUCGUugUU----------CGCG-------GCCGCGGau--UUGG- -5'
24464 5' -54.3 NC_005264.1 + 116115 0.66 0.944148
Target:  5'- -uGCcaGACAuAGCGCU-GCGCCUcuGCCg -3'
miRNA:   3'- cuCG--UUGU-UCGCGGcCGCGGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 89521 0.66 0.944148
Target:  5'- aGAGCGGCAGGCGgCCuauugauuGGCGC--GGGCa -3'
miRNA:   3'- -CUCGUUGUUCGC-GG--------CCGCGgaUUUGg -5'
24464 5' -54.3 NC_005264.1 + 36515 0.66 0.944148
Target:  5'- cGGCcucGACGAG-GCgGGCGCagGAGCCa -3'
miRNA:   3'- cUCG---UUGUUCgCGgCCGCGgaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 146763 0.66 0.944148
Target:  5'- cGGCAacaGCAAGCGCCGcGCGgCg----- -3'
miRNA:   3'- cUCGU---UGUUCGCGGC-CGCgGauuugg -5'
24464 5' -54.3 NC_005264.1 + 136131 0.66 0.944148
Target:  5'- -cGCGGgGAGCGCauGCGCCccGACa -3'
miRNA:   3'- cuCGUUgUUCGCGgcCGCGGauUUGg -5'
24464 5' -54.3 NC_005264.1 + 93490 0.66 0.944148
Target:  5'- aGGCGcuGCuGGCgGCCGGCGCgUcguucccuucGGACCu -3'
miRNA:   3'- cUCGU--UGuUCG-CGGCCGCGgA----------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 26120 0.66 0.944148
Target:  5'- -cGCGGCucguGGCG-CGGCGCCgagagaauggcGAGCCc -3'
miRNA:   3'- cuCGUUGu---UCGCgGCCGCGGa----------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 2995 0.66 0.944148
Target:  5'- cGAGCGcCGAcuGgGCCGGCGgCUcgGCUc -3'
miRNA:   3'- -CUCGUuGUU--CgCGGCCGCgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 6651 0.66 0.944148
Target:  5'- --cCGACAuauaGCCGGCGCCgccacGCCg -3'
miRNA:   3'- cucGUUGUucg-CGGCCGCGGauu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.