miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 5' -54.3 NC_005264.1 + 385 0.7 0.806156
Target:  5'- uGGGgGGC-AGCGCCGGCGCggucguguACCu -3'
miRNA:   3'- -CUCgUUGuUCGCGGCCGCGgauu----UGG- -5'
24464 5' -54.3 NC_005264.1 + 635 0.71 0.729942
Target:  5'- aGGCGACGauaacgacAGCGaCCGGCGaCUAAGCg -3'
miRNA:   3'- cUCGUUGU--------UCGC-GGCCGCgGAUUUGg -5'
24464 5' -54.3 NC_005264.1 + 1303 0.66 0.948575
Target:  5'- uGAGU--CGGGCGauguaCGGCGaucCCUAAACCc -3'
miRNA:   3'- -CUCGuuGUUCGCg----GCCGC---GGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 1540 0.67 0.924005
Target:  5'- -cGCGGCGuugaccGCGCCGGCaauaggcggGCCccGGCCg -3'
miRNA:   3'- cuCGUUGUu-----CGCGGCCG---------CGGauUUGG- -5'
24464 5' -54.3 NC_005264.1 + 2142 0.66 0.954372
Target:  5'- cGAGCAuuaacccauGCGAGCauagaccccuGCgGGCaugagaucauugcgaGCCUAAACCc -3'
miRNA:   3'- -CUCGU---------UGUUCG----------CGgCCG---------------CGGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 2397 0.7 0.777596
Target:  5'- gGAGCcc--GGCGCCGGCcuGCCUAGgaagaaagcggagGCCg -3'
miRNA:   3'- -CUCGuuguUCGCGGCCG--CGGAUU-------------UGG- -5'
24464 5' -54.3 NC_005264.1 + 2995 0.66 0.944148
Target:  5'- cGAGCGcCGAcuGgGCCGGCGgCUcgGCUc -3'
miRNA:   3'- -CUCGUuGUU--CgCGGCCGCgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 3619 0.71 0.726945
Target:  5'- gGGGCcGCGAGgGCgGGCGCgCUGAcauucgucgcgaugGCCg -3'
miRNA:   3'- -CUCGuUGUUCgCGgCCGCG-GAUU--------------UGG- -5'
24464 5' -54.3 NC_005264.1 + 3954 0.66 0.948575
Target:  5'- aGAGgAACGuccuggccGCGCCGGCcGgCUuuACCg -3'
miRNA:   3'- -CUCgUUGUu-------CGCGGCCG-CgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 6493 0.66 0.956715
Target:  5'- cGGCcauCGAGgGCCGGUaGCCggucuuGCCg -3'
miRNA:   3'- cUCGuu-GUUCgCGGCCG-CGGauu---UGG- -5'
24464 5' -54.3 NC_005264.1 + 6651 0.66 0.944148
Target:  5'- --cCGACAuauaGCCGGCGCCgccacGCCg -3'
miRNA:   3'- cucGUUGUucg-CGGCCGCGGauu--UGG- -5'
24464 5' -54.3 NC_005264.1 + 6838 0.7 0.806156
Target:  5'- cGGCGACuauGGCGCCaGCGCgc-AACCu -3'
miRNA:   3'- cUCGUUGu--UCGCGGcCGCGgauUUGG- -5'
24464 5' -54.3 NC_005264.1 + 7059 0.72 0.695579
Target:  5'- cGGCGACGGcGCcgGCCGGCGCCgucgcgcugcgggGAACUg -3'
miRNA:   3'- cUCGUUGUU-CG--CGGCCGCGGa------------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 7117 0.71 0.729942
Target:  5'- -cGCGcCGuuAGCGCCGGCcgaCUGAGCCg -3'
miRNA:   3'- cuCGUuGU--UCGCGGCCGcg-GAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 7867 0.68 0.886467
Target:  5'- uGGgGGC-GGCGUCGGCGCCccaGAugCg -3'
miRNA:   3'- cUCgUUGuUCGCGGCCGCGGa--UUugG- -5'
24464 5' -54.3 NC_005264.1 + 8008 0.67 0.929409
Target:  5'- gGGGcCGGCAgaGGCGCCcgccacgacGGCGCC---ACCg -3'
miRNA:   3'- -CUC-GUUGU--UCGCGG---------CCGCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 8300 0.67 0.934567
Target:  5'- uGGGCGACGGGgGCaccuGCGCCgcGGCg -3'
miRNA:   3'- -CUCGUUGUUCgCGgc--CGCGGauUUGg -5'
24464 5' -54.3 NC_005264.1 + 8490 0.69 0.840668
Target:  5'- aAGCAGCAGaguGgGCCGGCGCa--GAUCu -3'
miRNA:   3'- cUCGUUGUU---CgCGGCCGCGgauUUGG- -5'
24464 5' -54.3 NC_005264.1 + 9506 0.71 0.739874
Target:  5'- cAGCGuCAGGCG-CGGCGCCcucgagGGGCCc -3'
miRNA:   3'- cUCGUuGUUCGCgGCCGCGGa-----UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 9998 0.68 0.872069
Target:  5'- cGAGCccucGACGAGCcccguaGCCcGCGCCguucgGAACCc -3'
miRNA:   3'- -CUCG----UUGUUCG------CGGcCGCGGa----UUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.