miRNA display CGI


Results 1 - 20 of 299 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 5' -54.3 NC_005264.1 + 129751 0.72 0.699662
Target:  5'- cGAGCaAGCAAGCGgggaaacgagCGGCGacCCUGGACCa -3'
miRNA:   3'- -CUCG-UUGUUCGCg---------GCCGC--GGAUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 142687 0.73 0.637773
Target:  5'- -cGCGAUcuuGGGCGCCGGCGgCgc-GCCa -3'
miRNA:   3'- cuCGUUG---UUCGCGGCCGCgGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 154813 0.73 0.658514
Target:  5'- aGGGC-GCGguGGCGCCgucguggcgGGCGCCUcuGCCg -3'
miRNA:   3'- -CUCGuUGU--UCGCGG---------CCGCGGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 100907 0.72 0.668856
Target:  5'- uAGCAguuccucuucgcGCAAGCGgCGGCGCCcgUGcGCCu -3'
miRNA:   3'- cUCGU------------UGUUCGCgGCCGCGG--AUuUGG- -5'
24464 5' -54.3 NC_005264.1 + 18049 0.72 0.668856
Target:  5'- -cGCGA--AGCGgCGGCGCCgcGAGCCa -3'
miRNA:   3'- cuCGUUguUCGCgGCCGCGGa-UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 154034 0.72 0.689439
Target:  5'- cGAGCGGCGcucgaagaggAGCGCUGGCcGuCCU-GGCCg -3'
miRNA:   3'- -CUCGUUGU----------UCGCGGCCG-C-GGAuUUGG- -5'
24464 5' -54.3 NC_005264.1 + 156700 0.72 0.689439
Target:  5'- -cGCGACGGGCGCgCGGC-CCUc-GCCc -3'
miRNA:   3'- cuCGUUGUUCGCG-GCCGcGGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 126086 0.72 0.695579
Target:  5'- cGGCGACGGcGCcgGCCGGCGCCgucgcgcugcgggGAACUg -3'
miRNA:   3'- cUCGUUGUU-CG--CGGCCGCGGa------------UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 18568 0.72 0.699662
Target:  5'- gGAGCGGCAucCGCCGGCccaaggcagcgaGCC-AGGCCa -3'
miRNA:   3'- -CUCGUUGUucGCGGCCG------------CGGaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 26649 0.73 0.637773
Target:  5'- uAGC-GC-GGCGCCGGCGCCgc-GCUa -3'
miRNA:   3'- cUCGuUGuUCGCGGCCGCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 137298 0.73 0.627391
Target:  5'- -cGCGACAAGCGCCuuguccGCGCC---GCCu -3'
miRNA:   3'- cuCGUUGUUCGCGGc-----CGCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 54331 0.73 0.627391
Target:  5'- cAGCAGUAAGCGCgCGGCGUUUauggcGAGCCu -3'
miRNA:   3'- cUCGUUGUUCGCG-GCCGCGGA-----UUUGG- -5'
24464 5' -54.3 NC_005264.1 + 37135 0.77 0.429604
Target:  5'- gGGGCAcCAGGCGCCGGCgGUCUcu-CCa -3'
miRNA:   3'- -CUCGUuGUUCGCGGCCG-CGGAuuuGG- -5'
24464 5' -54.3 NC_005264.1 + 92930 0.76 0.476127
Target:  5'- uGAGCAAgGAGUGUCGGCGgCUcuACUa -3'
miRNA:   3'- -CUCGUUgUUCGCGGCCGCgGAuuUGG- -5'
24464 5' -54.3 NC_005264.1 + 155776 0.76 0.485732
Target:  5'- -cGCGACGGcGCcgGCCGGCGCCgucGCCg -3'
miRNA:   3'- cuCGUUGUU-CG--CGGCCGCGGauuUGG- -5'
24464 5' -54.3 NC_005264.1 + 96109 0.75 0.545114
Target:  5'- -cGCGGuuUAGGCGCCGGCGCUUGuuGCUc -3'
miRNA:   3'- cuCGUU--GUUCGCGGCCGCGGAUu-UGG- -5'
24464 5' -54.3 NC_005264.1 + 157465 0.74 0.555256
Target:  5'- aAGCAAuCGAGCGCCGGUGU--GAAUCa -3'
miRNA:   3'- cUCGUU-GUUCGCGGCCGCGgaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 21543 0.74 0.584951
Target:  5'- cGGGCGACcguuuauGGUguucuccgaggacGCCGGCGCCgAGACCg -3'
miRNA:   3'- -CUCGUUGu------UCG-------------CGGCCGCGGaUUUGG- -5'
24464 5' -54.3 NC_005264.1 + 159991 0.74 0.585981
Target:  5'- -cGCAGCGGGCGaCGGCGCgaGcgcGACCg -3'
miRNA:   3'- cuCGUUGUUCGCgGCCGCGgaU---UUGG- -5'
24464 5' -54.3 NC_005264.1 + 14376 0.74 0.585981
Target:  5'- gGAGCGcuucauucccucGCGGGCGCCGGCuGUUcuGACCa -3'
miRNA:   3'- -CUCGU------------UGUUCGCGGCCG-CGGauUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.