miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24467 3' -61.1 NC_005264.1 + 45030 0.66 0.701861
Target:  5'- gACGgCGG-CAGGauGGACGGCGa--- -3'
miRNA:   3'- -UGUgGCCgGUCCgcCCUGCCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 37978 0.66 0.701861
Target:  5'- aAC-CgCGGCCAGGCGaGuGGCGGCc---- -3'
miRNA:   3'- -UGuG-GCCGGUCCGC-C-CUGCCGcauuu -5'
24467 3' -61.1 NC_005264.1 + 157005 0.66 0.701861
Target:  5'- aAC-CgCGGCCAGGCGaGuGGCGGCc---- -3'
miRNA:   3'- -UGuG-GCCGGUCCGC-C-CUGCCGcauuu -5'
24467 3' -61.1 NC_005264.1 + 136794 0.66 0.692082
Target:  5'- gGCGCgUGGCCGGGCGGacaaaGCuGGCGg--- -3'
miRNA:   3'- -UGUG-GCCGGUCCGCCc----UG-CCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 79401 0.66 0.692082
Target:  5'- cCGCgGGCguGGCGaGGccGCGGCGg--- -3'
miRNA:   3'- uGUGgCCGguCCGC-CC--UGCCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 66469 0.66 0.692082
Target:  5'- gGCACCgccgcGGCCAgacucaaugcuuGGCGGGcugcGCGGCGc--- -3'
miRNA:   3'- -UGUGG-----CCGGU------------CCGCCC----UGCCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 68477 0.66 0.692082
Target:  5'- aAUAUUGGCCAGGCGGcuguaGCGGuCGa--- -3'
miRNA:   3'- -UGUGGCCGGUCCGCCc----UGCC-GCauuu -5'
24467 3' -61.1 NC_005264.1 + 119753 0.66 0.682256
Target:  5'- -aAUCGGCaAGGCGGcucugguCGGCGUAGAc -3'
miRNA:   3'- ugUGGCCGgUCCGCCcu-----GCCGCAUUU- -5'
24467 3' -61.1 NC_005264.1 + 13561 0.66 0.672391
Target:  5'- -gAgCGGCgCGGGCGGGACcggggaagGGCGg--- -3'
miRNA:   3'- ugUgGCCG-GUCCGCCCUG--------CCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 157365 0.66 0.672391
Target:  5'- gGCcCUGGCCGugaugcugggcGGCGGGGCGGUu---- -3'
miRNA:   3'- -UGuGGCCGGU-----------CCGCCCUGCCGcauuu -5'
24467 3' -61.1 NC_005264.1 + 38338 0.66 0.672391
Target:  5'- gGCcCUGGCCGugaugcugggcGGCGGGGCGGUu---- -3'
miRNA:   3'- -UGuGGCCGGU-----------CCGCCCUGCCGcauuu -5'
24467 3' -61.1 NC_005264.1 + 132588 0.66 0.672391
Target:  5'- -gAgCGGCgCGGGCGGGACcggggaagGGCGg--- -3'
miRNA:   3'- ugUgGCCG-GUCCGCCCUG--------CCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 98691 0.66 0.662495
Target:  5'- cACACCGGCCGGaucGCGGcGCcguGGCGa--- -3'
miRNA:   3'- -UGUGGCCGGUC---CGCCcUG---CCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 64404 0.66 0.662495
Target:  5'- aGC-CCGGCCaAGGCcgacgccgcGGGcACGGCGa--- -3'
miRNA:   3'- -UGuGGCCGG-UCCG---------CCC-UGCCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 25604 0.66 0.652576
Target:  5'- aGCGCCGGgCCGGcguuGCGGaacacGGCGGCGg--- -3'
miRNA:   3'- -UGUGGCC-GGUC----CGCC-----CUGCCGCauuu -5'
24467 3' -61.1 NC_005264.1 + 141483 0.67 0.642642
Target:  5'- cCACCGGCCgAGGCGGcccgggacgaACGGCa---- -3'
miRNA:   3'- uGUGGCCGG-UCCGCCc---------UGCCGcauuu -5'
24467 3' -61.1 NC_005264.1 + 89387 0.67 0.632699
Target:  5'- aGCGCCGGCUAGGCcaaGGGcagACuGCGcGAAa -3'
miRNA:   3'- -UGUGGCCGGUCCG---CCC---UGcCGCaUUU- -5'
24467 3' -61.1 NC_005264.1 + 121893 0.67 0.632699
Target:  5'- cGCugCGGCUgcgaucgaccgGGGCGcGGcGCGGCGggGAg -3'
miRNA:   3'- -UGugGCCGG-----------UCCGC-CC-UGCCGCauUU- -5'
24467 3' -61.1 NC_005264.1 + 80185 0.67 0.632699
Target:  5'- uGCGCgCGGUCuugaaaggagaGGcGCGGGACGuGUGUGAGa -3'
miRNA:   3'- -UGUG-GCCGG-----------UC-CGCCCUGC-CGCAUUU- -5'
24467 3' -61.1 NC_005264.1 + 2867 0.67 0.632699
Target:  5'- cGCugCGGCUgcgaucgaccgGGGCGcGGcGCGGCGggGAg -3'
miRNA:   3'- -UGugGCCGG-----------UCCGC-CC-UGCCGCauUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.