miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 98350 0.66 0.970717
Target:  5'- uCCAGGCGA-CUCucu-CgGCGCGCUUg -3'
miRNA:   3'- -GGUUCGCUcGAGuacuGgUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 148282 0.66 0.970717
Target:  5'- gCCcGGCGGGagauUCuggaGACCGCGCGCg- -3'
miRNA:   3'- -GGuUCGCUCg---AGua--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 113454 0.66 0.970717
Target:  5'- -aGAGCGGGgUCGgaccGACCcCGCGgUCg -3'
miRNA:   3'- ggUUCGCUCgAGUa---CUGGuGCGUgAG- -5'
24468 3' -53.7 NC_005264.1 + 24298 0.66 0.970717
Target:  5'- aCAcGGCGGcCUCuGUGGCUACGCGCa- -3'
miRNA:   3'- gGU-UCGCUcGAG-UACUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 19123 0.66 0.970717
Target:  5'- aCGAGCacuacgaugGGGCUaCGUgGACCuCGCAUUCg -3'
miRNA:   3'- gGUUCG---------CUCGA-GUA-CUGGuGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 142995 0.66 0.970717
Target:  5'- -gAGGCGGGCgugggGACC-CGCaACUCu -3'
miRNA:   3'- ggUUCGCUCGagua-CUGGuGCG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 66493 0.66 0.970717
Target:  5'- gCUuGGCGGGCUgc--GCgGCGCGCUCg -3'
miRNA:   3'- -GGuUCGCUCGAguacUGgUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 85804 0.66 0.970717
Target:  5'- uCCGGGuCGucGCUgucUGUGACCagaagcGCGCGCUCa -3'
miRNA:   3'- -GGUUC-GCu-CGA---GUACUGG------UGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 66973 0.66 0.970717
Target:  5'- cCCAGGCG-GCacggCAaGACCugGUuuCUCg -3'
miRNA:   3'- -GGUUCGCuCGa---GUaCUGGugCGu-GAG- -5'
24468 3' -53.7 NC_005264.1 + 110387 0.66 0.970717
Target:  5'- gCCGacGGCGGGCgCAUGcUgACGCuGCUCa -3'
miRNA:   3'- -GGU--UCGCUCGaGUACuGgUGCG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 41853 0.66 0.96893
Target:  5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3'
miRNA:   3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 160879 0.66 0.96893
Target:  5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3'
miRNA:   3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 17679 0.66 0.967696
Target:  5'- cUCAGGCGcAGC-CGaGGCCGCgGCgGCUCg -3'
miRNA:   3'- -GGUUCGC-UCGaGUaCUGGUG-CG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 61793 0.66 0.967696
Target:  5'- cUCGAGC-AGCUCcaccgGGCCGCGgGCaUCg -3'
miRNA:   3'- -GGUUCGcUCGAGua---CUGGUGCgUG-AG- -5'
24468 3' -53.7 NC_005264.1 + 105859 0.66 0.964461
Target:  5'- gCAAGCGAGCgcg-GGCgACGagggACUCg -3'
miRNA:   3'- gGUUCGCUCGaguaCUGgUGCg---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 30177 0.66 0.961005
Target:  5'- cCCAAGUcucGgUCGUGACUACGaACUCu -3'
miRNA:   3'- -GGUUCGcu-CgAGUACUGGUGCgUGAG- -5'
24468 3' -53.7 NC_005264.1 + 157147 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 123870 0.66 0.961005
Target:  5'- gCCAGGCGgcacagaguaGGCUC--GGCCACGCuGCg- -3'
miRNA:   3'- -GGUUCGC----------UCGAGuaCUGGUGCG-UGag -5'
24468 3' -53.7 NC_005264.1 + 38120 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 37381 0.66 0.961005
Target:  5'- uCCGAGCaGGGCgcggCAgaggGACCGCaacaauCGCUCg -3'
miRNA:   3'- -GGUUCG-CUCGa---GUa---CUGGUGc-----GUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.