Results 21 - 40 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 41853 | 0.66 | 0.96893 |
Target: 5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3' miRNA: 3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 66493 | 0.66 | 0.970717 |
Target: 5'- gCUuGGCGGGCUgc--GCgGCGCGCUCg -3' miRNA: 3'- -GGuUCGCUCGAguacUGgUGCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 142995 | 0.66 | 0.970717 |
Target: 5'- -gAGGCGGGCgugggGACC-CGCaACUCu -3' miRNA: 3'- ggUUCGCUCGagua-CUGGuGCG-UGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 66973 | 0.66 | 0.970717 |
Target: 5'- cCCAGGCG-GCacggCAaGACCugGUuuCUCg -3' miRNA: 3'- -GGUUCGCuCGa---GUaCUGGugCGu-GAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 85804 | 0.66 | 0.970717 |
Target: 5'- uCCGGGuCGucGCUgucUGUGACCagaagcGCGCGCUCa -3' miRNA: 3'- -GGUUC-GCu-CGA---GUACUGG------UGCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 98350 | 0.66 | 0.970717 |
Target: 5'- uCCAGGCGA-CUCucu-CgGCGCGCUUg -3' miRNA: 3'- -GGUUCGCUcGAGuacuGgUGCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 131334 | 0.67 | 0.939778 |
Target: 5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3' miRNA: 3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 48077 | 0.67 | 0.953411 |
Target: 5'- gCCGAGCG-GCgCAggGACaagaACGCGCUg -3' miRNA: 3'- -GGUUCGCuCGaGUa-CUGg---UGCGUGAg -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 149548 | 0.67 | 0.949265 |
Target: 5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3' miRNA: 3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 132374 | 0.67 | 0.952192 |
Target: 5'- cUCGAGCGAGaCUucuguacuggugaaCGUGGCCGCagGCACg- -3' miRNA: 3'- -GGUUCGCUC-GA--------------GUACUGGUG--CGUGag -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 102630 | 0.67 | 0.953411 |
Target: 5'- ---uGUGAuGaC-CGUGACUACGCACUCg -3' miRNA: 3'- gguuCGCU-C-GaGUACUGGUGCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 75114 | 0.67 | 0.935384 |
Target: 5'- gCCGAGCugGGGCgcagucaaAUGGCCGCGCG-UCa -3' miRNA: 3'- -GGUUCG--CUCGag------UACUGGUGCGUgAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 85863 | 0.67 | 0.938818 |
Target: 5'- cCCAuagauGGCGuGCUUGUGACCACcgaggccgugaaagGC-CUCg -3' miRNA: 3'- -GGU-----UCGCuCGAGUACUGGUG--------------CGuGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 131605 | 0.67 | 0.953411 |
Target: 5'- -gGAGCGGcGCgCGUGGgCGCGCGCg- -3' miRNA: 3'- ggUUCGCU-CGaGUACUgGUGCGUGag -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 65622 | 0.67 | 0.940254 |
Target: 5'- ---cGCG-GCUCGUGGguacCCGCGCGCg- -3' miRNA: 3'- gguuCGCuCGAGUACU----GGUGCGUGag -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 69779 | 0.67 | 0.940254 |
Target: 5'- uUCGGGCGgaGGCcgCAUGGCagcgcagcagCACGCAUUCg -3' miRNA: 3'- -GGUUCGC--UCGa-GUACUG----------GUGCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 110833 | 0.67 | 0.94488 |
Target: 5'- uCUGAGCGGGgUCGcu-CCGCGCGCg- -3' miRNA: 3'- -GGUUCGCUCgAGUacuGGUGCGUGag -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 98399 | 0.67 | 0.949265 |
Target: 5'- aCUGAGCcuauuGGCUUAUcGCCugGCGCUUa -3' miRNA: 3'- -GGUUCGc----UCGAGUAcUGGugCGUGAG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 12239 | 0.67 | 0.949265 |
Target: 5'- cCCAAGCGGuCUUGUGAUUACGgGC-Cg -3' miRNA: 3'- -GGUUCGCUcGAGUACUGGUGCgUGaG- -5' |
|||||||
24468 | 3' | -53.7 | NC_005264.1 | + | 45229 | 0.67 | 0.949265 |
Target: 5'- gCCGAGCGcAGCguaggCAUGGCCGCugaACg- -3' miRNA: 3'- -GGUUCGC-UCGa----GUACUGGUGcg-UGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home