miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 59838 1.13 0.002732
Target:  5'- aCCAAGCGAGCUCAUGACCACGCACUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 159550 0.78 0.422446
Target:  5'- cCCGcGCGAGCUCAcGACuCugGCGCUg -3'
miRNA:   3'- -GGUuCGCUCGAGUaCUG-GugCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 68176 0.77 0.487655
Target:  5'- aUCAcGGCGGGCacguUCAUGGCUACGUGCUCc -3'
miRNA:   3'- -GGU-UCGCUCG----AGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 62523 0.75 0.577673
Target:  5'- uCCAAGCGAGCUCA-GAUCGCugaaauGguCUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUaCUGGUG------CguGAG- -5'
24468 3' -53.7 NC_005264.1 + 21116 0.74 0.608619
Target:  5'- gCCAGGgGGGUUCGUGAUCACGaUACg- -3'
miRNA:   3'- -GGUUCgCUCGAGUACUGGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 138420 0.73 0.660447
Target:  5'- uCCGGGCGGGC--GUGuuuaacgcGCCGCGCGCUUa -3'
miRNA:   3'- -GGUUCGCUCGagUAC--------UGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 40210 0.73 0.670777
Target:  5'- aCCGAGCGGGCcugCAUGuauuCCACGaCGCa- -3'
miRNA:   3'- -GGUUCGCUCGa--GUACu---GGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 83535 0.73 0.69133
Target:  5'- --cGGCGAGCgaCAUGACCcCGCACg- -3'
miRNA:   3'- gguUCGCUCGa-GUACUGGuGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 25426 0.73 0.701535
Target:  5'- gCCAGGCGAuacgauugGCcuUCGUgccuagGACCGCGUACUCg -3'
miRNA:   3'- -GGUUCGCU--------CG--AGUA------CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 146089 0.72 0.721757
Target:  5'- cCCGcGCGGGuCUUGgugGACUACGCAUUCg -3'
miRNA:   3'- -GGUuCGCUC-GAGUa--CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 36713 0.72 0.731754
Target:  5'- gCAAGUGccaucGGCUCAgccGCCGCGCAUUCc -3'
miRNA:   3'- gGUUCGC-----UCGAGUac-UGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 92261 0.72 0.741662
Target:  5'- gCCAAGCGcGCUCuucGCCACGUAgauCUCg -3'
miRNA:   3'- -GGUUCGCuCGAGuacUGGUGCGU---GAG- -5'
24468 3' -53.7 NC_005264.1 + 146134 0.72 0.761173
Target:  5'- cCCAAGCGAGgaCcgcGACCACGUcUUCg -3'
miRNA:   3'- -GGUUCGCUCgaGua-CUGGUGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 62102 0.71 0.789536
Target:  5'- gCCucGGCGAGCUC--GACCAgCGCcCUCu -3'
miRNA:   3'- -GGu-UCGCUCGAGuaCUGGU-GCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 96333 0.71 0.789536
Target:  5'- -aAAGCGAGCUCGUcGAgCGCGcCGCg- -3'
miRNA:   3'- ggUUCGCUCGAGUA-CUgGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 102571 0.71 0.807732
Target:  5'- cCCGAcGCGGcGCUCAccgcagcucgcgUGACCgcauacaugGCGCGCUCu -3'
miRNA:   3'- -GGUU-CGCU-CGAGU------------ACUGG---------UGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 83629 0.71 0.807732
Target:  5'- gCCAAGCGAcGCUCGUaguuuuucucGACCcucucuACGCGCa- -3'
miRNA:   3'- -GGUUCGCU-CGAGUA----------CUGG------UGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 80562 0.7 0.816589
Target:  5'- gCAAGCGAGCUUuUGGuCCACGagaccaGCUUu -3'
miRNA:   3'- gGUUCGCUCGAGuACU-GGUGCg-----UGAG- -5'
24468 3' -53.7 NC_005264.1 + 139662 0.7 0.825274
Target:  5'- uCCGAGcCGGGCgcaauaAUGGCCAUagaaaauuccaaGCACUCg -3'
miRNA:   3'- -GGUUC-GCUCGag----UACUGGUG------------CGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 153193 0.7 0.825274
Target:  5'- gCCAAGCccugcuucagGAGCUauaCGUGAUCGCGUACa- -3'
miRNA:   3'- -GGUUCG----------CUCGA---GUACUGGUGCGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.