miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 3291 0.7 0.858132
Target:  5'- gCCAGagucGUGAGCUCGcgcggGAUCGCGCGC-Cg -3'
miRNA:   3'- -GGUU----CGCUCGAGUa----CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 119368 0.69 0.863549
Target:  5'- gUCAAGCGAGCUC-UGcgcgcgaagaucaaACacaACGCGCUUa -3'
miRNA:   3'- -GGUUCGCUCGAGuAC--------------UGg--UGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 126624 0.69 0.865839
Target:  5'- aCCucGCGGGCUC-UGGuCUGCGCGCa- -3'
miRNA:   3'- -GGuuCGCUCGAGuACU-GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 7597 0.69 0.865839
Target:  5'- aCCucGCGGGCUC-UGGuCUGCGCGCa- -3'
miRNA:   3'- -GGuuCGCUCGAGuACU-GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 36523 0.69 0.880598
Target:  5'- aCgAGGCGGGCgcaggagcCAUcGGCCGCGCGCcCg -3'
miRNA:   3'- -GgUUCGCUCGa-------GUA-CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 25161 0.69 0.880598
Target:  5'- -uGAGCGAGgaCGUGGCCACGgAaggCa -3'
miRNA:   3'- ggUUCGCUCgaGUACUGGUGCgUga-G- -5'
24468 3' -53.7 NC_005264.1 + 27640 0.69 0.88764
Target:  5'- gUCGcGCGAaCUCGuuUGGCCACGCggcGCUCg -3'
miRNA:   3'- -GGUuCGCUcGAGU--ACUGGUGCG---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 75518 0.69 0.89445
Target:  5'- gCCGAGCGuGCguauagugauguUUcgGGCCGCGUACg- -3'
miRNA:   3'- -GGUUCGCuCG------------AGuaCUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 119205 0.69 0.89445
Target:  5'- gCgAAGCGAGCguaacgCGcGACCACGCGa-- -3'
miRNA:   3'- -GgUUCGCUCGa-----GUaCUGGUGCGUgag -5'
24468 3' -53.7 NC_005264.1 + 85570 0.68 0.901025
Target:  5'- uUCGAGCGcGGCacCGUGcACCACGUGCUg -3'
miRNA:   3'- -GGUUCGC-UCGa-GUAC-UGGUGCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 133697 0.68 0.901025
Target:  5'- gCAuGCaAGCUaugcGGCCACGCGCUCc -3'
miRNA:   3'- gGUuCGcUCGAgua-CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 29706 0.68 0.907361
Target:  5'- aCGAGUGGGUUUugcGCCugGUGCUCa -3'
miRNA:   3'- gGUUCGCUCGAGuacUGGugCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 65763 0.68 0.907361
Target:  5'- gCCGugauGCGAGCuauuuuccgccUCAcggaGACCAUGCGCUUa -3'
miRNA:   3'- -GGUu---CGCUCG-----------AGUa---CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 23152 0.68 0.913454
Target:  5'- cCCAGGCGAGUgcuuggaauuuUCuAUGGCCauuauuGCGCccgGCUCg -3'
miRNA:   3'- -GGUUCGCUCG-----------AG-UACUGG------UGCG---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 26031 0.68 0.919305
Target:  5'- gCCAAGCGuccgccAGCUUuguccgcccGGCCACGCGC-Cg -3'
miRNA:   3'- -GGUUCGC------UCGAGua-------CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 64439 0.68 0.919305
Target:  5'- gCCAGGCGAuaagccaauagGCUCAguaucgucuuaUGGuCCAUGgGCUCg -3'
miRNA:   3'- -GGUUCGCU-----------CGAGU-----------ACU-GGUGCgUGAG- -5'
24468 3' -53.7 NC_005264.1 + 86890 0.68 0.919305
Target:  5'- aCAGGCGgcGGCcgCGauagaGACCACGCugUCc -3'
miRNA:   3'- gGUUCGC--UCGa-GUa----CUGGUGCGugAG- -5'
24468 3' -53.7 NC_005264.1 + 154117 0.68 0.919305
Target:  5'- -gGGGCGAGC-CGaaacggcGGCCACGCGCg- -3'
miRNA:   3'- ggUUCGCUCGaGUa------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 53917 0.68 0.921576
Target:  5'- cCCuuAGUGAGCUCuacacgaacuuccgcGUuaGACCGCGCGCa- -3'
miRNA:   3'- -GGu-UCGCUCGAG---------------UA--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 82194 0.68 0.92491
Target:  5'- -aGAGCG-GCcgugUCGUGGCCGCGCGuccaucgucCUCg -3'
miRNA:   3'- ggUUCGCuCG----AGUACUGGUGCGU---------GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.