miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 38120 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 62623 0.66 0.959924
Target:  5'- uCCGAGCaacugcgccccgcgGAGCUCAgcGAaguCGCGCUCg -3'
miRNA:   3'- -GGUUCG--------------CUCGAGUa-CUgguGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 91509 0.66 0.957323
Target:  5'- --cGGCG-GCguagaAUG-CCGCGCACUCg -3'
miRNA:   3'- gguUCGCuCGag---UACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 56904 0.66 0.957323
Target:  5'- aCUggGCGAGCaUUAUGggGCgGCGUACg- -3'
miRNA:   3'- -GGuuCGCUCG-AGUAC--UGgUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 103805 0.66 0.956943
Target:  5'- aCAAGCG-GCgg--GACCGCggggcuuGCGCUCg -3'
miRNA:   3'- gGUUCGCuCGaguaCUGGUG-------CGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 2690 0.66 0.956174
Target:  5'- gCAAGCGGGCUCuugcuugcagccagAUGGCaauGCaGCACUg -3'
miRNA:   3'- gGUUCGCUCGAG--------------UACUGg--UG-CGUGAg -5'
24468 3' -53.7 NC_005264.1 + 48077 0.67 0.953411
Target:  5'- gCCGAGCG-GCgCAggGACaagaACGCGCUg -3'
miRNA:   3'- -GGUUCGCuCGaGUa-CUGg---UGCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 131605 0.67 0.953411
Target:  5'- -gGAGCGGcGCgCGUGGgCGCGCGCg- -3'
miRNA:   3'- ggUUCGCU-CGaGUACUgGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 102630 0.67 0.953411
Target:  5'- ---uGUGAuGaC-CGUGACUACGCACUCg -3'
miRNA:   3'- gguuCGCU-C-GaGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 132374 0.67 0.952192
Target:  5'- cUCGAGCGAGaCUucuguacuggugaaCGUGGCCGCagGCACg- -3'
miRNA:   3'- -GGUUCGCUC-GA--------------GUACUGGUG--CGUGag -5'
24468 3' -53.7 NC_005264.1 + 45229 0.67 0.949265
Target:  5'- gCCGAGCGcAGCguaggCAUGGCCGCugaACg- -3'
miRNA:   3'- -GGUUCGC-UCGa----GUACUGGUGcg-UGag -5'
24468 3' -53.7 NC_005264.1 + 30521 0.67 0.949265
Target:  5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3'
miRNA:   3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 112256 0.67 0.949265
Target:  5'- gCCGGGCu-GCUCAgcGCCGCGUGCg- -3'
miRNA:   3'- -GGUUCGcuCGAGUacUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 12239 0.67 0.949265
Target:  5'- cCCAAGCGGuCUUGUGAUUACGgGC-Cg -3'
miRNA:   3'- -GGUUCGCUcGAGUACUGGUGCgUGaG- -5'
24468 3' -53.7 NC_005264.1 + 26794 0.67 0.949265
Target:  5'- gCAcGCGGGCUUccacgaggagaaGUgGGCCGCGcCGCUCu -3'
miRNA:   3'- gGUuCGCUCGAG------------UA-CUGGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 98399 0.67 0.949265
Target:  5'- aCUGAGCcuauuGGCUUAUcGCCugGCGCUUa -3'
miRNA:   3'- -GGUUCGc----UCGAGUAcUGGugCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 149548 0.67 0.949265
Target:  5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3'
miRNA:   3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 110833 0.67 0.94488
Target:  5'- uCUGAGCGGGgUCGcu-CCGCGCGCg- -3'
miRNA:   3'- -GGUUCGCUCgAGUacuGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 158250 0.67 0.94488
Target:  5'- uCCGuuGCGAGCUCGcuUGAgcaCCAUGuUGCUCg -3'
miRNA:   3'- -GGUu-CGCUCGAGU--ACU---GGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 141762 0.67 0.944428
Target:  5'- -gAGGCGAGCacggCAuauggcuUGGCCaACGCGCUa -3'
miRNA:   3'- ggUUCGCUCGa---GU-------ACUGG-UGCGUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.