miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 119607 0.67 0.940254
Target:  5'- uCCAGGCG-GCaCGUG-CCGCcuGCAUUCa -3'
miRNA:   3'- -GGUUCGCuCGaGUACuGGUG--CGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 65622 0.67 0.940254
Target:  5'- ---cGCG-GCUCGUGGguacCCGCGCGCg- -3'
miRNA:   3'- gguuCGCuCGAGUACU----GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 69779 0.67 0.940254
Target:  5'- uUCGGGCGgaGGCcgCAUGGCagcgcagcagCACGCAUUCg -3'
miRNA:   3'- -GGUUCGC--UCGa-GUACUG----------GUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 113867 0.67 0.940254
Target:  5'- aCAcAGCagGAGCUCAaacucgGACC-CGCAUUCg -3'
miRNA:   3'- gGU-UCG--CUCGAGUa-----CUGGuGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 112337 0.67 0.939778
Target:  5'- aCCAAggcagaacuggccGCG-GC-CGUGGCCACGUcCUCa -3'
miRNA:   3'- -GGUU-------------CGCuCGaGUACUGGUGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 12307 0.67 0.939778
Target:  5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3'
miRNA:   3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 131334 0.67 0.939778
Target:  5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3'
miRNA:   3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 85863 0.67 0.938818
Target:  5'- cCCAuagauGGCGuGCUUGUGACCACcgaggccgugaaagGC-CUCg -3'
miRNA:   3'- -GGU-----UCGCuCGAGUACUGGUG--------------CGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 19641 0.67 0.937361
Target:  5'- uCUGAGCGuGgUCGUGACUucuuccaucgucgucGgGCACUCg -3'
miRNA:   3'- -GGUUCGCuCgAGUACUGG---------------UgCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 25571 0.67 0.935384
Target:  5'- uCCAGGgGAGCUCuggcccAUGGCCAaaugaauaGCGC-Cg -3'
miRNA:   3'- -GGUUCgCUCGAG------UACUGGUg-------CGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 75114 0.67 0.935384
Target:  5'- gCCGAGCugGGGCgcagucaaAUGGCCGCGCG-UCa -3'
miRNA:   3'- -GGUUCG--CUCGag------UACUGGUGCGUgAG- -5'
24468 3' -53.7 NC_005264.1 + 57577 0.67 0.93027
Target:  5'- -aGAGCGGuuUCAUGGCCAUG-GCUCu -3'
miRNA:   3'- ggUUCGCUcgAGUACUGGUGCgUGAG- -5'
24468 3' -53.7 NC_005264.1 + 101726 0.67 0.93027
Target:  5'- cUCAAGacccucaaGAGCgUCuUGGCgGCGCGCUCc -3'
miRNA:   3'- -GGUUCg-------CUCG-AGuACUGgUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 27234 0.67 0.929745
Target:  5'- uUCAGGCGAGUUCGUGGuuaccgucccgacCCAccCGUAgUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUACU-------------GGU--GCGUgAG- -5'
24468 3' -53.7 NC_005264.1 + 44465 0.68 0.92491
Target:  5'- aCCAAGCGGcaggcGUUCGUGACCAuCG-ACgUCg -3'
miRNA:   3'- -GGUUCGCU-----CGAGUACUGGU-GCgUG-AG- -5'
24468 3' -53.7 NC_005264.1 + 82194 0.68 0.92491
Target:  5'- -aGAGCG-GCcgugUCGUGGCCGCGCGuccaucgucCUCg -3'
miRNA:   3'- ggUUCGCuCG----AGUACUGGUGCGU---------GAG- -5'
24468 3' -53.7 NC_005264.1 + 53917 0.68 0.921576
Target:  5'- cCCuuAGUGAGCUCuacacgaacuuccgcGUuaGACCGCGCGCa- -3'
miRNA:   3'- -GGu-UCGCUCGAG---------------UA--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 86890 0.68 0.919305
Target:  5'- aCAGGCGgcGGCcgCGauagaGACCACGCugUCc -3'
miRNA:   3'- gGUUCGC--UCGa-GUa----CUGGUGCGugAG- -5'
24468 3' -53.7 NC_005264.1 + 154117 0.68 0.919305
Target:  5'- -gGGGCGAGC-CGaaacggcGGCCACGCGCg- -3'
miRNA:   3'- ggUUCGCUCGaGUa------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 64439 0.68 0.919305
Target:  5'- gCCAGGCGAuaagccaauagGCUCAguaucgucuuaUGGuCCAUGgGCUCg -3'
miRNA:   3'- -GGUUCGCU-----------CGAGU-----------ACU-GGUGCgUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.