miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 2690 0.66 0.956174
Target:  5'- gCAAGCGGGCUCuugcuugcagccagAUGGCaauGCaGCACUg -3'
miRNA:   3'- gGUUCGCUCGAG--------------UACUGg--UG-CGUGAg -5'
24468 3' -53.7 NC_005264.1 + 3291 0.7 0.858132
Target:  5'- gCCAGagucGUGAGCUCGcgcggGAUCGCGCGC-Cg -3'
miRNA:   3'- -GGUU----CGCUCGAGUa----CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 4844 0.66 0.961005
Target:  5'- gCCAGGCGgcacagaguaGGCUC--GGCCACGCuGCg- -3'
miRNA:   3'- -GGUUCGC----------UCGAGuaCUGGUGCG-UGag -5'
24468 3' -53.7 NC_005264.1 + 7597 0.69 0.865839
Target:  5'- aCCucGCGGGCUC-UGGuCUGCGCGCa- -3'
miRNA:   3'- -GGuuCGCUCGAGuACU-GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 12239 0.67 0.949265
Target:  5'- cCCAAGCGGuCUUGUGAUUACGgGC-Cg -3'
miRNA:   3'- -GGUUCGCUcGAGUACUGGUGCgUGaG- -5'
24468 3' -53.7 NC_005264.1 + 12307 0.67 0.939778
Target:  5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3'
miRNA:   3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 17679 0.66 0.967696
Target:  5'- cUCAGGCGcAGC-CGaGGCCGCgGCgGCUCg -3'
miRNA:   3'- -GGUUCGC-UCGaGUaCUGGUG-CG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 19123 0.66 0.970717
Target:  5'- aCGAGCacuacgaugGGGCUaCGUgGACCuCGCAUUCg -3'
miRNA:   3'- gGUUCG---------CUCGA-GUA-CUGGuGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 19641 0.67 0.937361
Target:  5'- uCUGAGCGuGgUCGUGACUucuuccaucgucgucGgGCACUCg -3'
miRNA:   3'- -GGUUCGCuCgAGUACUGG---------------UgCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 21116 0.74 0.608619
Target:  5'- gCCAGGgGGGUUCGUGAUCACGaUACg- -3'
miRNA:   3'- -GGUUCgCUCGAGUACUGGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 23152 0.68 0.913454
Target:  5'- cCCAGGCGAGUgcuuggaauuuUCuAUGGCCauuauuGCGCccgGCUCg -3'
miRNA:   3'- -GGUUCGCUCG-----------AG-UACUGG------UGCG---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 24298 0.66 0.970717
Target:  5'- aCAcGGCGGcCUCuGUGGCUACGCGCa- -3'
miRNA:   3'- gGU-UCGCUcGAG-UACUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 25161 0.69 0.880598
Target:  5'- -uGAGCGAGgaCGUGGCCACGgAaggCa -3'
miRNA:   3'- ggUUCGCUCgaGUACUGGUGCgUga-G- -5'
24468 3' -53.7 NC_005264.1 + 25426 0.73 0.701535
Target:  5'- gCCAGGCGAuacgauugGCcuUCGUgccuagGACCGCGUACUCg -3'
miRNA:   3'- -GGUUCGCU--------CG--AGUA------CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 25571 0.67 0.935384
Target:  5'- uCCAGGgGAGCUCuggcccAUGGCCAaaugaauaGCGC-Cg -3'
miRNA:   3'- -GGUUCgCUCGAG------UACUGGUg-------CGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 26031 0.68 0.919305
Target:  5'- gCCAAGCGuccgccAGCUUuguccgcccGGCCACGCGC-Cg -3'
miRNA:   3'- -GGUUCGC------UCGAGua-------CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 26794 0.67 0.949265
Target:  5'- gCAcGCGGGCUUccacgaggagaaGUgGGCCGCGcCGCUCu -3'
miRNA:   3'- gGUuCGCUCGAG------------UA-CUGGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 27234 0.67 0.929745
Target:  5'- uUCAGGCGAGUUCGUGGuuaccgucccgacCCAccCGUAgUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUACU-------------GGU--GCGUgAG- -5'
24468 3' -53.7 NC_005264.1 + 27640 0.69 0.88764
Target:  5'- gUCGcGCGAaCUCGuuUGGCCACGCggcGCUCg -3'
miRNA:   3'- -GGUuCGCUcGAGU--ACUGGUGCG---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 29706 0.68 0.907361
Target:  5'- aCGAGUGGGUUUugcGCCugGUGCUCa -3'
miRNA:   3'- gGUUCGCUCGAGuacUGGugCGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.