miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 30177 0.66 0.961005
Target:  5'- cCCAAGUcucGgUCGUGACUACGaACUCu -3'
miRNA:   3'- -GGUUCGcu-CgAGUACUGGUGCgUGAG- -5'
24468 3' -53.7 NC_005264.1 + 30521 0.67 0.949265
Target:  5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3'
miRNA:   3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 36523 0.69 0.880598
Target:  5'- aCgAGGCGGGCgcaggagcCAUcGGCCGCGCGCcCg -3'
miRNA:   3'- -GgUUCGCUCGa-------GUA-CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 36713 0.72 0.731754
Target:  5'- gCAAGUGccaucGGCUCAgccGCCGCGCAUUCc -3'
miRNA:   3'- gGUUCGC-----UCGAGUac-UGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 37381 0.66 0.961005
Target:  5'- uCCGAGCaGGGCgcggCAgaggGACCGCaacaauCGCUCg -3'
miRNA:   3'- -GGUUCG-CUCGa---GUa---CUGGUGc-----GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 38120 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 40210 0.73 0.670777
Target:  5'- aCCGAGCGGGCcugCAUGuauuCCACGaCGCa- -3'
miRNA:   3'- -GGUUCGCUCGa--GUACu---GGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 41853 0.66 0.96893
Target:  5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3'
miRNA:   3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 44465 0.68 0.92491
Target:  5'- aCCAAGCGGcaggcGUUCGUGACCAuCG-ACgUCg -3'
miRNA:   3'- -GGUUCGCU-----CGAGUACUGGU-GCgUG-AG- -5'
24468 3' -53.7 NC_005264.1 + 45229 0.67 0.949265
Target:  5'- gCCGAGCGcAGCguaggCAUGGCCGCugaACg- -3'
miRNA:   3'- -GGUUCGC-UCGa----GUACUGGUGcg-UGag -5'
24468 3' -53.7 NC_005264.1 + 48077 0.67 0.953411
Target:  5'- gCCGAGCG-GCgCAggGACaagaACGCGCUg -3'
miRNA:   3'- -GGUUCGCuCGaGUa-CUGg---UGCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 53917 0.68 0.921576
Target:  5'- cCCuuAGUGAGCUCuacacgaacuuccgcGUuaGACCGCGCGCa- -3'
miRNA:   3'- -GGu-UCGCUCGAG---------------UA--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 56904 0.66 0.957323
Target:  5'- aCUggGCGAGCaUUAUGggGCgGCGUACg- -3'
miRNA:   3'- -GGuuCGCUCG-AGUAC--UGgUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 57577 0.67 0.93027
Target:  5'- -aGAGCGGuuUCAUGGCCAUG-GCUCu -3'
miRNA:   3'- ggUUCGCUcgAGUACUGGUGCgUGAG- -5'
24468 3' -53.7 NC_005264.1 + 59838 1.13 0.002732
Target:  5'- aCCAAGCGAGCUCAUGACCACGCACUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 61793 0.66 0.967696
Target:  5'- cUCGAGC-AGCUCcaccgGGCCGCGgGCaUCg -3'
miRNA:   3'- -GGUUCGcUCGAGua---CUGGUGCgUG-AG- -5'
24468 3' -53.7 NC_005264.1 + 62102 0.71 0.789536
Target:  5'- gCCucGGCGAGCUC--GACCAgCGCcCUCu -3'
miRNA:   3'- -GGu-UCGCUCGAGuaCUGGU-GCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 62523 0.75 0.577673
Target:  5'- uCCAAGCGAGCUCA-GAUCGCugaaauGguCUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUaCUGGUG------CguGAG- -5'
24468 3' -53.7 NC_005264.1 + 62623 0.66 0.959924
Target:  5'- uCCGAGCaacugcgccccgcgGAGCUCAgcGAaguCGCGCUCg -3'
miRNA:   3'- -GGUUCG--------------CUCGAGUa-CUgguGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 64439 0.68 0.919305
Target:  5'- gCCAGGCGAuaagccaauagGCUCAguaucgucuuaUGGuCCAUGgGCUCg -3'
miRNA:   3'- -GGUUCGCU-----------CGAGU-----------ACU-GGUGCgUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.