miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 160879 0.66 0.96893
Target:  5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3'
miRNA:   3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 159550 0.78 0.422446
Target:  5'- cCCGcGCGAGCUCAcGACuCugGCGCUg -3'
miRNA:   3'- -GGUuCGCUCGAGUaCUG-GugCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 158250 0.67 0.94488
Target:  5'- uCCGuuGCGAGCUCGcuUGAgcaCCAUGuUGCUCg -3'
miRNA:   3'- -GGUu-CGCUCGAGU--ACU---GGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 157147 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 154117 0.68 0.919305
Target:  5'- -gGGGCGAGC-CGaaacggcGGCCACGCGCg- -3'
miRNA:   3'- ggUUCGCUCGaGUa------CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 153193 0.7 0.825274
Target:  5'- gCCAAGCccugcuucagGAGCUauaCGUGAUCGCGUACa- -3'
miRNA:   3'- -GGUUCG----------CUCGA---GUACUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 149548 0.67 0.949265
Target:  5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3'
miRNA:   3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 148282 0.66 0.970717
Target:  5'- gCCcGGCGGGagauUCuggaGACCGCGCGCg- -3'
miRNA:   3'- -GGuUCGCUCg---AGua--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 146134 0.72 0.761173
Target:  5'- cCCAAGCGAGgaCcgcGACCACGUcUUCg -3'
miRNA:   3'- -GGUUCGCUCgaGua-CUGGUGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 146089 0.72 0.721757
Target:  5'- cCCGcGCGGGuCUUGgugGACUACGCAUUCg -3'
miRNA:   3'- -GGUuCGCUC-GAGUa--CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 142995 0.66 0.970717
Target:  5'- -gAGGCGGGCgugggGACC-CGCaACUCu -3'
miRNA:   3'- ggUUCGCUCGagua-CUGGuGCG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 141762 0.67 0.944428
Target:  5'- -gAGGCGAGCacggCAuauggcuUGGCCaACGCGCUa -3'
miRNA:   3'- ggUUCGCUCGa---GU-------ACUGG-UGCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 139662 0.7 0.825274
Target:  5'- uCCGAGcCGGGCgcaauaAUGGCCAUagaaaauuccaaGCACUCg -3'
miRNA:   3'- -GGUUC-GCUCGag----UACUGGUG------------CGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 138420 0.73 0.660447
Target:  5'- uCCGGGCGGGC--GUGuuuaacgcGCCGCGCGCUUa -3'
miRNA:   3'- -GGUUCGCUCGagUAC--------UGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 133697 0.68 0.901025
Target:  5'- gCAuGCaAGCUaugcGGCCACGCGCUCc -3'
miRNA:   3'- gGUuCGcUCGAgua-CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 132374 0.67 0.952192
Target:  5'- cUCGAGCGAGaCUucuguacuggugaaCGUGGCCGCagGCACg- -3'
miRNA:   3'- -GGUUCGCUC-GA--------------GUACUGGUG--CGUGag -5'
24468 3' -53.7 NC_005264.1 + 131605 0.67 0.953411
Target:  5'- -gGAGCGGcGCgCGUGGgCGCGCGCg- -3'
miRNA:   3'- ggUUCGCU-CGaGUACUgGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 131334 0.67 0.939778
Target:  5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3'
miRNA:   3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 126624 0.69 0.865839
Target:  5'- aCCucGCGGGCUC-UGGuCUGCGCGCa- -3'
miRNA:   3'- -GGuuCGCUCGAGuACU-GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 123870 0.66 0.961005
Target:  5'- gCCAGGCGgcacagaguaGGCUC--GGCCACGCuGCg- -3'
miRNA:   3'- -GGUUCGC----------UCGAGuaCUGGUGCG-UGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.