miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 131334 0.67 0.939778
Target:  5'- cCCGAGCcugGAGCcgccugaccuuccUCGUGACUggGCGCAC-Ca -3'
miRNA:   3'- -GGUUCG---CUCG-------------AGUACUGG--UGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 29706 0.68 0.907361
Target:  5'- aCGAGUGGGUUUugcGCCugGUGCUCa -3'
miRNA:   3'- gGUUCGCUCGAGuacUGGugCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 23152 0.68 0.913454
Target:  5'- cCCAGGCGAGUgcuuggaauuuUCuAUGGCCauuauuGCGCccgGCUCg -3'
miRNA:   3'- -GGUUCGCUCG-----------AG-UACUGG------UGCG---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 86890 0.68 0.919305
Target:  5'- aCAGGCGgcGGCcgCGauagaGACCACGCugUCc -3'
miRNA:   3'- gGUUCGC--UCGa-GUa----CUGGUGCGugAG- -5'
24468 3' -53.7 NC_005264.1 + 53917 0.68 0.921576
Target:  5'- cCCuuAGUGAGCUCuacacgaacuuccgcGUuaGACCGCGCGCa- -3'
miRNA:   3'- -GGu-UCGCUCGAG---------------UA--CUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 82194 0.68 0.92491
Target:  5'- -aGAGCG-GCcgugUCGUGGCCGCGCGuccaucgucCUCg -3'
miRNA:   3'- ggUUCGCuCG----AGUACUGGUGCGU---------GAG- -5'
24468 3' -53.7 NC_005264.1 + 44465 0.68 0.92491
Target:  5'- aCCAAGCGGcaggcGUUCGUGACCAuCG-ACgUCg -3'
miRNA:   3'- -GGUUCGCU-----CGAGUACUGGU-GCgUG-AG- -5'
24468 3' -53.7 NC_005264.1 + 75114 0.67 0.935384
Target:  5'- gCCGAGCugGGGCgcagucaaAUGGCCGCGCG-UCa -3'
miRNA:   3'- -GGUUCG--CUCGag------UACUGGUGCGUgAG- -5'
24468 3' -53.7 NC_005264.1 + 85863 0.67 0.938818
Target:  5'- cCCAuagauGGCGuGCUUGUGACCACcgaggccgugaaagGC-CUCg -3'
miRNA:   3'- -GGU-----UCGCuCGAGUACUGGUG--------------CGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 85570 0.68 0.901025
Target:  5'- uUCGAGCGcGGCacCGUGcACCACGUGCUg -3'
miRNA:   3'- -GGUUCGC-UCGa-GUAC-UGGUGCGUGAg -5'
24468 3' -53.7 NC_005264.1 + 36523 0.69 0.880598
Target:  5'- aCgAGGCGGGCgcaggagcCAUcGGCCGCGCGCcCg -3'
miRNA:   3'- -GgUUCGCUCGa-------GUA-CUGGUGCGUGaG- -5'
24468 3' -53.7 NC_005264.1 + 126624 0.69 0.865839
Target:  5'- aCCucGCGGGCUC-UGGuCUGCGCGCa- -3'
miRNA:   3'- -GGuuCGCUCGAGuACU-GGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 40210 0.73 0.670777
Target:  5'- aCCGAGCGGGCcugCAUGuauuCCACGaCGCa- -3'
miRNA:   3'- -GGUUCGCUCGa--GUACu---GGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 25426 0.73 0.701535
Target:  5'- gCCAGGCGAuacgauugGCcuUCGUgccuagGACCGCGUACUCg -3'
miRNA:   3'- -GGUUCGCU--------CG--AGUA------CUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 36713 0.72 0.731754
Target:  5'- gCAAGUGccaucGGCUCAgccGCCGCGCAUUCc -3'
miRNA:   3'- gGUUCGC-----UCGAGUac-UGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 146134 0.72 0.761173
Target:  5'- cCCAAGCGAGgaCcgcGACCACGUcUUCg -3'
miRNA:   3'- -GGUUCGCUCgaGua-CUGGUGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 96333 0.71 0.789536
Target:  5'- -aAAGCGAGCUCGUcGAgCGCGcCGCg- -3'
miRNA:   3'- ggUUCGCUCGAGUA-CUgGUGC-GUGag -5'
24468 3' -53.7 NC_005264.1 + 62102 0.71 0.789536
Target:  5'- gCCucGGCGAGCUC--GACCAgCGCcCUCu -3'
miRNA:   3'- -GGu-UCGCUCGAGuaCUGGU-GCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 83629 0.71 0.807732
Target:  5'- gCCAAGCGAcGCUCGUaguuuuucucGACCcucucuACGCGCa- -3'
miRNA:   3'- -GGUUCGCU-CGAGUA----------CUGG------UGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 3291 0.7 0.858132
Target:  5'- gCCAGagucGUGAGCUCGcgcggGAUCGCGCGC-Cg -3'
miRNA:   3'- -GGUU----CGCUCGAGUa----CUGGUGCGUGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.