miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 3' -53.7 NC_005264.1 + 98350 0.66 0.970717
Target:  5'- uCCAGGCGA-CUCucu-CgGCGCGCUUg -3'
miRNA:   3'- -GGUUCGCUcGAGuacuGgUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 112256 0.67 0.949265
Target:  5'- gCCGGGCu-GCUCAgcGCCGCGUGCg- -3'
miRNA:   3'- -GGUUCGcuCGAGUacUGGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 158250 0.67 0.94488
Target:  5'- uCCGuuGCGAGCUCGcuUGAgcaCCAUGuUGCUCg -3'
miRNA:   3'- -GGUu-CGCUCGAGU--ACU---GGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 59838 1.13 0.002732
Target:  5'- aCCAAGCGAGCUCAUGACCACGCACUCg -3'
miRNA:   3'- -GGUUCGCUCGAGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 110387 0.66 0.970717
Target:  5'- gCCGacGGCGGGCgCAUGcUgACGCuGCUCa -3'
miRNA:   3'- -GGU--UCGCUCGaGUACuGgUGCG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 66493 0.66 0.970717
Target:  5'- gCUuGGCGGGCUgc--GCgGCGCGCUCg -3'
miRNA:   3'- -GGuUCGCUCGAguacUGgUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 105859 0.66 0.964461
Target:  5'- gCAAGCGAGCgcg-GGCgACGagggACUCg -3'
miRNA:   3'- gGUUCGCUCGaguaCUGgUGCg---UGAG- -5'
24468 3' -53.7 NC_005264.1 + 38120 0.66 0.961005
Target:  5'- gCCAGGCGu-----UGcCCGCGCGCUCu -3'
miRNA:   3'- -GGUUCGCucgaguACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 56904 0.66 0.957323
Target:  5'- aCUggGCGAGCaUUAUGggGCgGCGUACg- -3'
miRNA:   3'- -GGuuCGCUCG-AGUAC--UGgUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 30521 0.67 0.949265
Target:  5'- uCCGGG-GAGCUCcacGACC-CGC-CUCg -3'
miRNA:   3'- -GGUUCgCUCGAGua-CUGGuGCGuGAG- -5'
24468 3' -53.7 NC_005264.1 + 131605 0.67 0.953411
Target:  5'- -gGAGCGGcGCgCGUGGgCGCGCGCg- -3'
miRNA:   3'- ggUUCGCU-CGaGUACUgGUGCGUGag -5'
24468 3' -53.7 NC_005264.1 + 91509 0.66 0.957323
Target:  5'- --cGGCG-GCguagaAUG-CCGCGCACUCg -3'
miRNA:   3'- gguUCGCuCGag---UACuGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 85804 0.66 0.970717
Target:  5'- uCCGGGuCGucGCUgucUGUGACCagaagcGCGCGCUCa -3'
miRNA:   3'- -GGUUC-GCu-CGA---GUACUGG------UGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 102630 0.67 0.953411
Target:  5'- ---uGUGAuGaC-CGUGACUACGCACUCg -3'
miRNA:   3'- gguuCGCU-C-GaGUACUGGUGCGUGAG- -5'
24468 3' -53.7 NC_005264.1 + 66973 0.66 0.970717
Target:  5'- cCCAGGCG-GCacggCAaGACCugGUuuCUCg -3'
miRNA:   3'- -GGUUCGCuCGa---GUaCUGGugCGu-GAG- -5'
24468 3' -53.7 NC_005264.1 + 4844 0.66 0.961005
Target:  5'- gCCAGGCGgcacagaguaGGCUC--GGCCACGCuGCg- -3'
miRNA:   3'- -GGUUCGC----------UCGAGuaCUGGUGCG-UGag -5'
24468 3' -53.7 NC_005264.1 + 132374 0.67 0.952192
Target:  5'- cUCGAGCGAGaCUucuguacuggugaaCGUGGCCGCagGCACg- -3'
miRNA:   3'- -GGUUCGCUC-GA--------------GUACUGGUG--CGUGag -5'
24468 3' -53.7 NC_005264.1 + 26794 0.67 0.949265
Target:  5'- gCAcGCGGGCUUccacgaggagaaGUgGGCCGCGcCGCUCu -3'
miRNA:   3'- gGUuCGCUCGAG------------UA-CUGGUGC-GUGAG- -5'
24468 3' -53.7 NC_005264.1 + 142995 0.66 0.970717
Target:  5'- -gAGGCGGGCgugggGACC-CGCaACUCu -3'
miRNA:   3'- ggUUCGCUCGagua-CUGGuGCG-UGAG- -5'
24468 3' -53.7 NC_005264.1 + 41853 0.66 0.96893
Target:  5'- gCAuauGgGAGCUCGggggggggggcaacGGCCGCGCACa- -3'
miRNA:   3'- gGUu--CgCUCGAGUa-------------CUGGUGCGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.