miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 5' -50.7 NC_005264.1 + 143589 0.66 0.994949
Target:  5'- gGGGCCCG-GAGGGaACGAGAauggCGCg- -3'
miRNA:   3'- gCUUGGGCgCUCUC-UGUUUUa---GCGaa -5'
24468 5' -50.7 NC_005264.1 + 85847 0.66 0.994949
Target:  5'- gGGACCCGgaGGGAGGCccauAGAUgGCg- -3'
miRNA:   3'- gCUUGGGCg-CUCUCUGu---UUUAgCGaa -5'
24468 5' -50.7 NC_005264.1 + 46029 0.66 0.994949
Target:  5'- uCGAACCCGCuGGccgaugccaGGGCGcAAUCGCc- -3'
miRNA:   3'- -GCUUGGGCGcUC---------UCUGUuUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 91556 0.66 0.993204
Target:  5'- uCGGGCgCgGCGGGGGGCAcgaggcuuGUCGCg- -3'
miRNA:   3'- -GCUUG-GgCGCUCUCUGUuu------UAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 124284 0.66 0.993204
Target:  5'- aGAGCgC-CGGGAGGCG-AGUCGCg- -3'
miRNA:   3'- gCUUGgGcGCUCUCUGUuUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 75316 0.66 0.993204
Target:  5'- gGAGgCCGCGGGcGGCucaucGAUCGCg- -3'
miRNA:   3'- gCUUgGGCGCUCuCUGuu---UUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 126037 0.66 0.993204
Target:  5'- --cGCCUGCGccgcAGAGACAacuAAGUCGUUg -3'
miRNA:   3'- gcuUGGGCGC----UCUCUGU---UUUAGCGAa -5'
24468 5' -50.7 NC_005264.1 + 5257 0.66 0.993204
Target:  5'- aGAGCgC-CGGGAGGCG-AGUCGCg- -3'
miRNA:   3'- gCUUGgGcGCUCUCUGUuUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 147417 0.67 0.991008
Target:  5'- gGAACCCGCGGuu--CAucAUCGCUa -3'
miRNA:   3'- gCUUGGGCGCUcucuGUuuUAGCGAa -5'
24468 5' -50.7 NC_005264.1 + 85031 0.67 0.991008
Target:  5'- -uGugCCGCGGGGcauucGGCAAcGUCGCUa -3'
miRNA:   3'- gcUugGGCGCUCU-----CUGUUuUAGCGAa -5'
24468 5' -50.7 NC_005264.1 + 114147 0.67 0.991008
Target:  5'- gCGAGCgaCCGCGAcGAG-CAGAcUCGCg- -3'
miRNA:   3'- -GCUUG--GGCGCU-CUCuGUUUuAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 2906 0.67 0.988288
Target:  5'- aGGGCgaCgGCGAGAgcGACGGAGUCGCc- -3'
miRNA:   3'- gCUUG--GgCGCUCU--CUGUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 121932 0.67 0.988288
Target:  5'- aGGGCgaCgGCGAGAgcGACGGAGUCGCc- -3'
miRNA:   3'- gCUUG--GgCGCUCU--CUGUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 58262 0.67 0.986708
Target:  5'- cCGAuCCCGUGGGcGGCAugg-CGCUUg -3'
miRNA:   3'- -GCUuGGGCGCUCuCUGUuuuaGCGAA- -5'
24468 5' -50.7 NC_005264.1 + 19267 0.67 0.986708
Target:  5'- cCGGGCCC-CGGGGacGGCAGAGUCGg-- -3'
miRNA:   3'- -GCUUGGGcGCUCU--CUGUUUUAGCgaa -5'
24468 5' -50.7 NC_005264.1 + 8740 0.67 0.986708
Target:  5'- uGAGCCgGgGAG-GACcGAAUCGCc- -3'
miRNA:   3'- gCUUGGgCgCUCuCUGuUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 62624 0.67 0.986708
Target:  5'- cCGAGcaacugcgcCCCGCG-GAGcucaGCGAAGUCGCg- -3'
miRNA:   3'- -GCUU---------GGGCGCuCUC----UGUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 127766 0.67 0.986708
Target:  5'- uGAGCCgGgGAG-GACcGAAUCGCc- -3'
miRNA:   3'- gCUUGGgCgCUCuCUGuUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 101855 0.68 0.980978
Target:  5'- aCGAGgCCGCGAuagucggcgccGAGACAaugGAGUgGCUg -3'
miRNA:   3'- -GCUUgGGCGCU-----------CUCUGU---UUUAgCGAa -5'
24468 5' -50.7 NC_005264.1 + 86652 0.68 0.973576
Target:  5'- uGGGCgCCGCGGGGGACAcccuaGCUc -3'
miRNA:   3'- gCUUG-GGCGCUCUCUGUuuuagCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.