miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24468 5' -50.7 NC_005264.1 + 59872 0.94 0.079453
Target:  5'- gCGAACCCG-GAGAGACAAAAUCGCUUa -3'
miRNA:   3'- -GCUUGGGCgCUCUCUGUUUUAGCGAA- -5'
24468 5' -50.7 NC_005264.1 + 147602 0.78 0.597054
Target:  5'- uCGAGCCCGCGuugaacuuAGAGcGCAGGAUCGCc- -3'
miRNA:   3'- -GCUUGGGCGC--------UCUC-UGUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 36227 0.76 0.692298
Target:  5'- aGAGCCCGCGAGguuuagGGGCGGAGcCGCa- -3'
miRNA:   3'- gCUUGGGCGCUC------UCUGUUUUaGCGaa -5'
24468 5' -50.7 NC_005264.1 + 155254 0.76 0.692298
Target:  5'- aGAGCCCGCGAGguuuagGGGCGGAGcCGCa- -3'
miRNA:   3'- gCUUGGGCGCUC------UCUGUUUUaGCGaa -5'
24468 5' -50.7 NC_005264.1 + 47655 0.74 0.792591
Target:  5'- gGAugUCGCG-GAGugAGAAUCGCa- -3'
miRNA:   3'- gCUugGGCGCuCUCugUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 137907 0.74 0.80193
Target:  5'- aGGACCCGCagccGGGcGAUAAGAUCGCg- -3'
miRNA:   3'- gCUUGGGCG----CUCuCUGUUUUAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 123281 0.72 0.862168
Target:  5'- uGGGCCCGCGGGGGAUcuAAUCa--- -3'
miRNA:   3'- gCUUGGGCGCUCUCUGuuUUAGcgaa -5'
24468 5' -50.7 NC_005264.1 + 20300 0.72 0.88479
Target:  5'- -cGGCCC-CGAGGGGCuGAGGUCGCUg -3'
miRNA:   3'- gcUUGGGcGCUCUCUG-UUUUAGCGAa -5'
24468 5' -50.7 NC_005264.1 + 3618 0.71 0.905248
Target:  5'- gGGGgCCGCGAG-GGCGGGcgCGCUg -3'
miRNA:   3'- gCUUgGGCGCUCuCUGUUUuaGCGAa -5'
24468 5' -50.7 NC_005264.1 + 122645 0.71 0.905248
Target:  5'- gGGGgCCGCGAG-GGCGGGcgCGCUg -3'
miRNA:   3'- gCUUgGGCGCUCuCUGUUUuaGCGAa -5'
24468 5' -50.7 NC_005264.1 + 148460 0.71 0.923439
Target:  5'- cCGGcGCCCGCGAGGGAauGAAgCGCUc -3'
miRNA:   3'- -GCU-UGGGCGCUCUCUguUUUaGCGAa -5'
24468 5' -50.7 NC_005264.1 + 11560 0.69 0.956938
Target:  5'- aGAGCCCGCGAuuGGCcuaGAGGcCGCUUa -3'
miRNA:   3'- gCUUGGGCGCUcuCUG---UUUUaGCGAA- -5'
24468 5' -50.7 NC_005264.1 + 130587 0.69 0.956938
Target:  5'- aGAGCCCGCGAuuGGCcuaGAGGcCGCUUa -3'
miRNA:   3'- gCUUGGGCGCUcuCUG---UUUUaGCGAA- -5'
24468 5' -50.7 NC_005264.1 + 68051 0.69 0.956938
Target:  5'- cCGuGCCCGaCGAGGcGGCGAGAUCGg-- -3'
miRNA:   3'- -GCuUGGGC-GCUCU-CUGUUUUAGCgaa -5'
24468 5' -50.7 NC_005264.1 + 53198 0.69 0.96428
Target:  5'- cCGGGgCCGCGAGuuGCAAccGUCGCg- -3'
miRNA:   3'- -GCUUgGGCGCUCucUGUUu-UAGCGaa -5'
24468 5' -50.7 NC_005264.1 + 43203 0.69 0.970697
Target:  5'- gCGGGCCgGCGGGGGGgGGGGggGCUa -3'
miRNA:   3'- -GCUUGGgCGCUCUCUgUUUUagCGAa -5'
24468 5' -50.7 NC_005264.1 + 36078 0.69 0.970697
Target:  5'- aGAGCCCGUuuccGAG-GACGGGAUgGCg- -3'
miRNA:   3'- gCUUGGGCG----CUCuCUGUUUUAgCGaa -5'
24468 5' -50.7 NC_005264.1 + 162230 0.69 0.970697
Target:  5'- gCGGGCCgGCGGGGGGgGGGGggGCUa -3'
miRNA:   3'- -GCUUGGgCGCUCUCUgUUUUagCGAa -5'
24468 5' -50.7 NC_005264.1 + 155105 0.69 0.970697
Target:  5'- aGAGCCCGUuuccGAG-GACGGGAUgGCg- -3'
miRNA:   3'- gCUUGGGCG----CUCuCUGUUUUAgCGaa -5'
24468 5' -50.7 NC_005264.1 + 53078 0.69 0.971875
Target:  5'- gCGGACCCaGCGGGAgugucuaagcuggugGACAAGG-CGCUc -3'
miRNA:   3'- -GCUUGGG-CGCUCU---------------CUGUUUUaGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.