Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24468 | 5' | -50.7 | NC_005264.1 | + | 155254 | 0.76 | 0.692298 |
Target: 5'- aGAGCCCGCGAGguuuagGGGCGGAGcCGCa- -3' miRNA: 3'- gCUUGGGCGCUC------UCUGUUUUaGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 85031 | 0.67 | 0.991008 |
Target: 5'- -uGugCCGCGGGGcauucGGCAAcGUCGCUa -3' miRNA: 3'- gcUugGGCGCUCU-----CUGUUuUAGCGAa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 114147 | 0.67 | 0.991008 |
Target: 5'- gCGAGCgaCCGCGAcGAG-CAGAcUCGCg- -3' miRNA: 3'- -GCUUG--GGCGCU-CUCuGUUUuAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 147417 | 0.67 | 0.991008 |
Target: 5'- gGAACCCGCGGuu--CAucAUCGCUa -3' miRNA: 3'- gCUUGGGCGCUcucuGUuuUAGCGAa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 75316 | 0.66 | 0.993204 |
Target: 5'- gGAGgCCGCGGGcGGCucaucGAUCGCg- -3' miRNA: 3'- gCUUgGGCGCUCuCUGuu---UUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 124284 | 0.66 | 0.993204 |
Target: 5'- aGAGCgC-CGGGAGGCG-AGUCGCg- -3' miRNA: 3'- gCUUGgGcGCUCUCUGUuUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 46029 | 0.66 | 0.994949 |
Target: 5'- uCGAACCCGCuGGccgaugccaGGGCGcAAUCGCc- -3' miRNA: 3'- -GCUUGGGCGcUC---------UCUGUuUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 85847 | 0.66 | 0.994949 |
Target: 5'- gGGACCCGgaGGGAGGCccauAGAUgGCg- -3' miRNA: 3'- gCUUGGGCg-CUCUCUGu---UUUAgCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 143589 | 0.66 | 0.994949 |
Target: 5'- gGGGCCCG-GAGGGaACGAGAauggCGCg- -3' miRNA: 3'- gCUUGGGCgCUCUC-UGUUUUa---GCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 121932 | 0.67 | 0.988288 |
Target: 5'- aGGGCgaCgGCGAGAgcGACGGAGUCGCc- -3' miRNA: 3'- gCUUG--GgCGCUCU--CUGUUUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 62624 | 0.67 | 0.986708 |
Target: 5'- cCGAGcaacugcgcCCCGCG-GAGcucaGCGAAGUCGCg- -3' miRNA: 3'- -GCUU---------GGGCGCuCUC----UGUUUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 127766 | 0.67 | 0.986708 |
Target: 5'- uGAGCCgGgGAG-GACcGAAUCGCc- -3' miRNA: 3'- gCUUGGgCgCUCuCUGuUUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 47655 | 0.74 | 0.792591 |
Target: 5'- gGAugUCGCG-GAGugAGAAUCGCa- -3' miRNA: 3'- gCUugGGCGCuCUCugUUUUAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 20300 | 0.72 | 0.88479 |
Target: 5'- -cGGCCC-CGAGGGGCuGAGGUCGCUg -3' miRNA: 3'- gcUUGGGcGCUCUCUG-UUUUAGCGAa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 122645 | 0.71 | 0.905248 |
Target: 5'- gGGGgCCGCGAG-GGCGGGcgCGCUg -3' miRNA: 3'- gCUUgGGCGCUCuCUGUUUuaGCGAa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 130587 | 0.69 | 0.956938 |
Target: 5'- aGAGCCCGCGAuuGGCcuaGAGGcCGCUUa -3' miRNA: 3'- gCUUGGGCGCUcuCUG---UUUUaGCGAA- -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 68051 | 0.69 | 0.956938 |
Target: 5'- cCGuGCCCGaCGAGGcGGCGAGAUCGg-- -3' miRNA: 3'- -GCuUGGGC-GCUCU-CUGUUUUAGCgaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 53198 | 0.69 | 0.96428 |
Target: 5'- cCGGGgCCGCGAGuuGCAAccGUCGCg- -3' miRNA: 3'- -GCUUgGGCGCUCucUGUUu-UAGCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 155105 | 0.69 | 0.970697 |
Target: 5'- aGAGCCCGUuuccGAG-GACGGGAUgGCg- -3' miRNA: 3'- gCUUGGGCG----CUCuCUGUUUUAgCGaa -5' |
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24468 | 5' | -50.7 | NC_005264.1 | + | 162230 | 0.69 | 0.970697 |
Target: 5'- gCGGGCCgGCGGGGGGgGGGGggGCUa -3' miRNA: 3'- -GCUUGGgCGCUCUCUgUUUUagCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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