Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24469 | 3' | -51.8 | NC_005264.1 | + | 132458 | 0.69 | 0.951445 |
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Target: 5'- cCGCCGCCGcCGag-ACGCGACgcgGCg -3' miRNA: 3'- aGUGGUGGCaGCacaUGUGCUGa--UGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 135572 | 0.69 | 0.947175 |
|
Target: 5'- -aGCCGCgCGUCGcu--CGCGACUACg -3' miRNA: 3'- agUGGUG-GCAGCacauGUGCUGAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 137224 | 0.66 | 0.987325 |
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Target: 5'- cCACCGCCGcCGUGUuccgcaACGcCGGCccgGCg -3' miRNA: 3'- aGUGGUGGCaGCACA------UGU-GCUGa--UGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 144841 | 0.66 | 0.993469 |
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Target: 5'- cCGCCGCCGUCagagccgGUGC-CGGCUuugaACg -3' miRNA: 3'- aGUGGUGGCAGca-----CAUGuGCUGA----UGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 148220 | 0.68 | 0.974949 |
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Target: 5'- uUCGCaucgauGCCGUCGUGU-CuCGAUUACg -3' miRNA: 3'- -AGUGg-----UGGCAGCACAuGuGCUGAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 149533 | 0.67 | 0.983886 |
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Target: 5'- gCGUCGCCGUCGUaaccaggaggGUACAUGACU-CUc -3' miRNA: 3'- aGUGGUGGCAGCA----------CAUGUGCUGAuGA- -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 150833 | 0.72 | 0.876923 |
|
Target: 5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3' miRNA: 3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 156319 | 0.67 | 0.985685 |
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Target: 5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3' miRNA: 3'- agUGGUGGCa---GCACAUG-UGCUGauga -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 158143 | 0.7 | 0.927663 |
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Target: 5'- -aGCUGCUGUCGUGgACGCGGCgccACUc -3' miRNA: 3'- agUGGUGGCAGCACaUGUGCUGa--UGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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