Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24469 | 3' | -51.8 | NC_005264.1 | + | 111580 | 0.68 | 0.974949 |
Target: 5'- -aACCGCCGUgGUGUucuCGuggUGGCUGCa -3' miRNA: 3'- agUGGUGGCAgCACAu--GU---GCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 148220 | 0.68 | 0.974949 |
Target: 5'- uUCGCaucgauGCCGUCGUGU-CuCGAUUACg -3' miRNA: 3'- -AGUGg-----UGGCAGCACAuGuGCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 30263 | 0.67 | 0.977461 |
Target: 5'- gCugCACCGaaGUGUaGCGCGGCcGCg -3' miRNA: 3'- aGugGUGGCagCACA-UGUGCUGaUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 125296 | 0.67 | 0.977461 |
Target: 5'- gUCGCCGCCGUCGggagGCAaacaGAUcuUGCa -3' miRNA: 3'- -AGUGGUGGCAGCaca-UGUg---CUG--AUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 54137 | 0.67 | 0.981922 |
Target: 5'- gCGCCGggGUCG-GUGC-CGACUACa -3' miRNA: 3'- aGUGGUggCAGCaCAUGuGCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 88473 | 0.67 | 0.979783 |
Target: 5'- aCACgaCGCCGUUGUGUGgauugucucguCGCGACUGa- -3' miRNA: 3'- aGUG--GUGGCAGCACAU-----------GUGCUGAUga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 6269 | 0.67 | 0.977461 |
Target: 5'- gUCGCCGCCGUCGggagGCAaacaGAUcuUGCa -3' miRNA: 3'- -AGUGGUGGCAGCaca-UGUg---CUG--AUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 102871 | 0.68 | 0.974949 |
Target: 5'- cCACCGCCG-CGUGgcugaGCGGCgcggACa -3' miRNA: 3'- aGUGGUGGCaGCACaug--UGCUGa---UGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 79142 | 0.68 | 0.969019 |
Target: 5'- cCGCCACCGcauuUCGUGUacuacacGCGCGGCc--- -3' miRNA: 3'- aGUGGUGGC----AGCACA-------UGUGCUGauga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 46906 | 0.68 | 0.962848 |
Target: 5'- gCugCGCCG-CGUGUuCGCGGCU-CUc -3' miRNA: 3'- aGugGUGGCaGCACAuGUGCUGAuGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 94736 | 0.69 | 0.955478 |
Target: 5'- gCGCC-UUGUCGcUGUACGCGACagaUACUa -3' miRNA: 3'- aGUGGuGGCAGC-ACAUGUGCUG---AUGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 149533 | 0.67 | 0.983886 |
Target: 5'- gCGUCGCCGUCGUaaccaggaggGUACAUGACU-CUc -3' miRNA: 3'- aGUGGUGGCAGCA----------CAUGUGCUGAuGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 84243 | 0.67 | 0.983886 |
Target: 5'- cUUGCCuACCG-CGUGgACACGcGCUGCg -3' miRNA: 3'- -AGUGG-UGGCaGCACaUGUGC-UGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 37292 | 0.67 | 0.985685 |
Target: 5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3' miRNA: 3'- agUGGUGGCa---GCACAUG-UGCUGauga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 80137 | 0.67 | 0.985685 |
Target: 5'- -gGCCGCUGUCGUG-GCugGGuCUAg- -3' miRNA: 3'- agUGGUGGCAGCACaUGugCU-GAUga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 126888 | 0.66 | 0.987168 |
Target: 5'- aUCGCCAUCGUCG---GCGCGaaacaggucucgcGCUACa -3' miRNA: 3'- -AGUGGUGGCAGCacaUGUGC-------------UGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 69420 | 0.66 | 0.987325 |
Target: 5'- -uGCCGCCGUCGgaGUAUguaACGAUUAa- -3' miRNA: 3'- agUGGUGGCAGCa-CAUG---UGCUGAUga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 21511 | 0.66 | 0.991272 |
Target: 5'- gCACCGCCGUCGcagugggcgcaggUGUAguUGAC-GCUu -3' miRNA: 3'- aGUGGUGGCAGC-------------ACAUguGCUGaUGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 54548 | 0.66 | 0.992486 |
Target: 5'- uUCGCCGCCGacUCG-GUcaGCGCGAUU-CUc -3' miRNA: 3'- -AGUGGUGGC--AGCaCA--UGUGCUGAuGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 59479 | 1.08 | 0.009705 |
Target: 5'- gUCACCACCGUCGUGUACACGACUACUu -3' miRNA: 3'- -AGUGGUGGCAGCACAUGUGCUGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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