Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24469 | 3' | -51.8 | NC_005264.1 | + | 51993 | 0.71 | 0.910446 |
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Target: 5'- uUCGCCgagaggACCGUCG-GUGCucuaGACUACg -3' miRNA: 3'- -AGUGG------UGGCAGCaCAUGug--CUGAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 18172 | 0.71 | 0.910446 |
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Target: 5'- gCGCCACUGUCGUGgGgGCGAaaACa -3' miRNA: 3'- aGUGGUGGCAGCACaUgUGCUgaUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 75399 | 0.71 | 0.897748 |
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Target: 5'- gCGCCACCGUC---UGCGCGGCcGCg -3' miRNA: 3'- aGUGGUGGCAGcacAUGUGCUGaUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 90766 | 0.71 | 0.89104 |
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Target: 5'- -uGCCGCCGUgGcUGUGCAUGACa--- -3' miRNA: 3'- agUGGUGGCAgC-ACAUGUGCUGauga -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 31807 | 0.72 | 0.876923 |
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Target: 5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3' miRNA: 3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 150833 | 0.72 | 0.876923 |
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Target: 5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3' miRNA: 3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 72465 | 0.72 | 0.846032 |
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Target: 5'- gCGCCGCCGgucggaUCGUGUAC-CGGCaGCg -3' miRNA: 3'- aGUGGUGGC------AGCACAUGuGCUGaUGa -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 103350 | 0.75 | 0.6959 |
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Target: 5'- cCGCUACaaaguaGUCGUGUACACGACg--- -3' miRNA: 3'- aGUGGUGg-----CAGCACAUGUGCUGauga -5' |
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| 24469 | 3' | -51.8 | NC_005264.1 | + | 59479 | 1.08 | 0.009705 |
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Target: 5'- gUCACCACCGUCGUGUACACGACUACUu -3' miRNA: 3'- -AGUGGUGGCAGCACAUGUGCUGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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