miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24470 5' -55.4 NC_005264.1 + 137212 0.69 0.791296
Target:  5'- cGGaGCGCGGCCccaccgccgcCGUGUuccgcaacgCCGGCCCg -3'
miRNA:   3'- aCCaUGUGUCGGua--------GUACA---------GGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 141489 0.69 0.800326
Target:  5'- cGGc-UACAGCC-UCA--UCCGGCCCc -3'
miRNA:   3'- aCCauGUGUCGGuAGUacAGGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 77468 0.69 0.812711
Target:  5'- cGGUACACAGCgGcUCGggcuggGUCCacucugaauuaggauGGCCUg -3'
miRNA:   3'- aCCAUGUGUCGgU-AGUa-----CAGG---------------CCGGG- -5'
24470 5' -55.4 NC_005264.1 + 102845 0.68 0.866408
Target:  5'- cGGccACGCGGCCGUCucgcUCgCGGCCa -3'
miRNA:   3'- aCCa-UGUGUCGGUAGuac-AG-GCCGGg -5'
24470 5' -55.4 NC_005264.1 + 146629 0.68 0.851021
Target:  5'- gGGUAgCGCGGCgCGUCccccguUGUCCGGUa- -3'
miRNA:   3'- aCCAU-GUGUCG-GUAGu-----ACAGGCCGgg -5'
24470 5' -55.4 NC_005264.1 + 90458 0.68 0.851021
Target:  5'- gUGGgcgGCGCGGCCGUCAaacaaaGUCCaaGUCCc -3'
miRNA:   3'- -ACCa--UGUGUCGGUAGUa-----CAGGc-CGGG- -5'
24470 5' -55.4 NC_005264.1 + 4981 0.69 0.817921
Target:  5'- cGGUGC-CcGCCAUCGUcgucguucucGUCCGcGCCg -3'
miRNA:   3'- aCCAUGuGuCGGUAGUA----------CAGGC-CGGg -5'
24470 5' -55.4 NC_005264.1 + 141136 0.69 0.809204
Target:  5'- ---cGCACGGCCgggGUCAUGUUacgaGGUCCg -3'
miRNA:   3'- accaUGUGUCGG---UAGUACAGg---CCGGG- -5'
24470 5' -55.4 NC_005264.1 + 895 0.7 0.74417
Target:  5'- gGGUGUACGGCCc-CGUGUCgCGGgCCg -3'
miRNA:   3'- aCCAUGUGUCGGuaGUACAG-GCCgGG- -5'
24470 5' -55.4 NC_005264.1 + 35784 0.72 0.649838
Target:  5'- cGGaggGCGCGguggcGCCGUCGUGgcgggcgccucugCCGGCCCc -3'
miRNA:   3'- aCCa--UGUGU-----CGGUAGUACa------------GGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 8216 0.67 0.901095
Target:  5'- cGGagACGCGGCCAUCGg--CCGaaGCCg -3'
miRNA:   3'- aCCa-UGUGUCGGUAGUacaGGC--CGGg -5'
24470 5' -55.4 NC_005264.1 + 139990 0.67 0.901095
Target:  5'- aGGUucGCGCGGCCucgCccGUCCGuaCCCg -3'
miRNA:   3'- aCCA--UGUGUCGGua-GuaCAGGCc-GGG- -5'
24470 5' -55.4 NC_005264.1 + 35023 0.67 0.901095
Target:  5'- aGGaGCGCuGGCCGUCcUGgCCGacGCCCg -3'
miRNA:   3'- aCCaUGUG-UCGGUAGuACaGGC--CGGG- -5'
24470 5' -55.4 NC_005264.1 + 20510 0.67 0.901095
Target:  5'- cGGUGCAUucguAGaCGUCucuGUGUCCGGCg- -3'
miRNA:   3'- aCCAUGUG----UCgGUAG---UACAGGCCGgg -5'
24470 5' -55.4 NC_005264.1 + 5980 0.67 0.907349
Target:  5'- aUGGgagACugGGCCAagGggaGUCguCGGCCCc -3'
miRNA:   3'- -ACCa--UGugUCGGUagUa--CAG--GCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 120590 0.66 0.913366
Target:  5'- --aUGCuACAGCCAUCAcaUGUCCcuGCCg -3'
miRNA:   3'- accAUG-UGUCGGUAGU--ACAGGc-CGGg -5'
24470 5' -55.4 NC_005264.1 + 112571 0.66 0.919147
Target:  5'- uUGGUGaucucCGCGGCCAUgGcGUCCccagaGGCCa -3'
miRNA:   3'- -ACCAU-----GUGUCGGUAgUaCAGG-----CCGGg -5'
24470 5' -55.4 NC_005264.1 + 7107 0.66 0.924689
Target:  5'- cGGUuuccaACGC-GCCGUUAgcgCCGGCCg -3'
miRNA:   3'- aCCA-----UGUGuCGGUAGUacaGGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 78502 0.66 0.934558
Target:  5'- cGGUGCACgcggugaGGCCAguaacCAUcgcgCCGuGCCCg -3'
miRNA:   3'- aCCAUGUG-------UCGGUa----GUAca--GGC-CGGG- -5'
24470 5' -55.4 NC_005264.1 + 59385 1.12 0.002018
Target:  5'- cUGGUACACAGCCAUCAUGUCCGGCCCg -3'
miRNA:   3'- -ACCAUGUGUCGGUAGUACAGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.