miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24471 3' -51 NC_005264.1 + 102 0.66 0.993734
Target:  5'- --cAGAGAUagcuaGCCCAuGGagCUCCGCg -3'
miRNA:   3'- cuaUCUUUGg----CGGGUuUCagGAGGUG- -5'
24471 3' -51 NC_005264.1 + 153394 0.66 0.992759
Target:  5'- ---cGAGACCccaCCCAgGAGuucuUCCUCCACg -3'
miRNA:   3'- cuauCUUUGGc--GGGU-UUC----AGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 13987 0.66 0.992759
Target:  5'- ---cGGggUCGCCCAGA--CCUCCAa -3'
miRNA:   3'- cuauCUuuGGCGGGUUUcaGGAGGUg -5'
24471 3' -51 NC_005264.1 + 34367 0.66 0.992759
Target:  5'- ---cGAGACCccaCCCAgGAGuucuUCCUCCACg -3'
miRNA:   3'- cuauCUUUGGc--GGGU-UUC----AGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 83409 0.66 0.992655
Target:  5'- --cGGAGaccccgcACCGCCCAcgcuGGGUUCcgCCGCg -3'
miRNA:   3'- cuaUCUU-------UGGCGGGU----UUCAGGa-GGUG- -5'
24471 3' -51 NC_005264.1 + 94369 0.66 0.992444
Target:  5'- -----cAGCCGCCUggccaauauuagugGAGGcCCUCCGCg -3'
miRNA:   3'- cuaucuUUGGCGGG--------------UUUCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 92725 0.66 0.991666
Target:  5'- --gGGAGuacGCgGCagcucgaUAAGGUCCUCCGCg -3'
miRNA:   3'- cuaUCUU---UGgCGg------GUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 155747 0.66 0.991666
Target:  5'- -uUGGAAACCGaaaCCucAGUUCcCCGCa -3'
miRNA:   3'- cuAUCUUUGGCg--GGuuUCAGGaGGUG- -5'
24471 3' -51 NC_005264.1 + 36721 0.66 0.991666
Target:  5'- -uUGGAAACCGaaaCCucAGUUCcCCGCa -3'
miRNA:   3'- cuAUCUUUGGCg--GGuuUCAGGaGGUG- -5'
24471 3' -51 NC_005264.1 + 94107 0.66 0.991666
Target:  5'- -------cCCGCCCGAGGUUCUggcgCCGCu -3'
miRNA:   3'- cuaucuuuGGCGGGUUUCAGGA----GGUG- -5'
24471 3' -51 NC_005264.1 + 159422 0.66 0.990447
Target:  5'- aGUGGGGcgcGCCGCCUuccauGGUCgUUCCGCu -3'
miRNA:   3'- cUAUCUU---UGGCGGGuu---UCAG-GAGGUG- -5'
24471 3' -51 NC_005264.1 + 2561 0.66 0.990447
Target:  5'- --cGGGGuacuCCGagucuUCAGAGUCCUCCGCc -3'
miRNA:   3'- cuaUCUUu---GGCg----GGUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 7511 0.66 0.990447
Target:  5'- aGUAGuAACCGCCCcacauuUCCUCUAUu -3'
miRNA:   3'- cUAUCuUUGGCGGGuuuc--AGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 121588 0.66 0.990447
Target:  5'- --cGGGGuacuCCGagucuUCAGAGUCCUCCGCc -3'
miRNA:   3'- cuaUCUUu---GGCg----GGUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 64399 0.66 0.989092
Target:  5'- -cUGGAAGcCCGgCCAAGG-CCgacgCCGCg -3'
miRNA:   3'- cuAUCUUU-GGCgGGUUUCaGGa---GGUG- -5'
24471 3' -51 NC_005264.1 + 103814 0.67 0.985937
Target:  5'- --cGGAGACCGaCCUGAcgcgccugCCUCCGCg -3'
miRNA:   3'- cuaUCUUUGGC-GGGUUuca-----GGAGGUG- -5'
24471 3' -51 NC_005264.1 + 7205 0.67 0.984119
Target:  5'- cGAUA--AACUGaUCCAGGG-CCUCCACg -3'
miRNA:   3'- -CUAUcuUUGGC-GGGUUUCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 81233 0.67 0.982128
Target:  5'- -uUGGAcACCGCCUAAggguuucgagacAGUCUUCCcCg -3'
miRNA:   3'- cuAUCUuUGGCGGGUU------------UCAGGAGGuG- -5'
24471 3' -51 NC_005264.1 + 155368 0.67 0.979954
Target:  5'- --aGGAGGCCGCaCGAcGUUCUCCGg -3'
miRNA:   3'- cuaUCUUUGGCGgGUUuCAGGAGGUg -5'
24471 3' -51 NC_005264.1 + 93620 0.67 0.979954
Target:  5'- --cAGcuGGCCGCUgAGcuGUCCUCCGCa -3'
miRNA:   3'- cuaUCu-UUGGCGGgUUu-CAGGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.