Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24471 | 3' | -51 | NC_005264.1 | + | 155368 | 0.67 | 0.979954 |
Target: 5'- --aGGAGGCCGCaCGAcGUUCUCCGg -3' miRNA: 3'- cuaUCUUUGGCGgGUUuCAGGAGGUg -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 11002 | 0.68 | 0.97759 |
Target: 5'- --cGGAGcgGCgGCCCc-AGUCUUCCGCu -3' miRNA: 3'- cuaUCUU--UGgCGGGuuUCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 54855 | 0.68 | 0.97759 |
Target: 5'- -cUGGGAGCCGCCCGca----UCCACg -3' miRNA: 3'- cuAUCUUUGGCGGGUuucaggAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 139177 | 0.68 | 0.977093 |
Target: 5'- cAUAGAAGgCGCCCAuaccgccaugccGGUCCUgUACu -3' miRNA: 3'- cUAUCUUUgGCGGGUu-----------UCAGGAgGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 140601 | 0.68 | 0.975026 |
Target: 5'- -uUAGAggcGACCGCCCAgaccgccgacGAGgcgacgaCUCCACu -3' miRNA: 3'- cuAUCU---UUGGCGGGU----------UUCag-----GAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 82918 | 0.68 | 0.972255 |
Target: 5'- aGUGGAGuCCGCCgCAGAcGUCggCCACg -3' miRNA: 3'- cUAUCUUuGGCGG-GUUU-CAGgaGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 98022 | 0.68 | 0.96606 |
Target: 5'- --cGGAAACCGUCguGAGcCCUgCGCu -3' miRNA: 3'- cuaUCUUUGGCGGguUUCaGGAgGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 37364 | 0.68 | 0.96606 |
Target: 5'- ------cGCCGCCgaGGAGUUCUCCGCc -3' miRNA: 3'- cuaucuuUGGCGGg-UUUCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 156391 | 0.68 | 0.96606 |
Target: 5'- ------cGCCGCCgaGGAGUUCUCCGCc -3' miRNA: 3'- cuaucuuUGGCGGg-UUUCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 112002 | 0.69 | 0.962622 |
Target: 5'- uGUGG--GCCGuaaCCCAGuuagGGUCCUCCGCc -3' miRNA: 3'- cUAUCuuUGGC---GGGUU----UCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 11302 | 0.69 | 0.960076 |
Target: 5'- gGGUAGGGcguccacGCCGCCCAugaguucuagcuuGUCCUCUAg -3' miRNA: 3'- -CUAUCUU-------UGGCGGGUuu-----------CAGGAGGUg -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 116233 | 0.69 | 0.956631 |
Target: 5'- ---cGGAGCCGUCCucgccccgcagggacAGAG-CCUCCGCa -3' miRNA: 3'- cuauCUUUGGCGGG---------------UUUCaGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 33966 | 0.69 | 0.955036 |
Target: 5'- cGAUAGggGCCGCUUGAc--CCUCuCGCg -3' miRNA: 3'- -CUAUCuuUGGCGGGUUucaGGAG-GUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 152993 | 0.69 | 0.955036 |
Target: 5'- cGAUAGggGCCGCUUGAc--CCUCuCGCg -3' miRNA: 3'- -CUAUCuuUGGCGGGUUucaGGAG-GUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 70794 | 0.69 | 0.950878 |
Target: 5'- --aAGGAgcGCgGCCCAccGaCCUCCACa -3' miRNA: 3'- cuaUCUU--UGgCGGGUuuCaGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 5075 | 0.69 | 0.94647 |
Target: 5'- --aGGcgGCCaGCCCGuccggggagGGGUCCUCUACg -3' miRNA: 3'- cuaUCuuUGG-CGGGU---------UUCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 124102 | 0.69 | 0.94647 |
Target: 5'- --aGGcgGCCaGCCCGuccggggagGGGUCCUCUACg -3' miRNA: 3'- cuaUCuuUGG-CGGGU---------UUCAGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 145397 | 0.7 | 0.941809 |
Target: 5'- cGUAcAGACUGCCCAGGG-CgUCCGCu -3' miRNA: 3'- cUAUcUUUGGCGGGUUUCaGgAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 34069 | 0.7 | 0.941809 |
Target: 5'- uGUGGAAGCCGCgCAcuggcgcgaAGGaCUUCCACg -3' miRNA: 3'- cUAUCUUUGGCGgGU---------UUCaGGAGGUG- -5' |
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24471 | 3' | -51 | NC_005264.1 | + | 131929 | 0.71 | 0.888311 |
Target: 5'- ----cGAGCCGCCCGGccucgcAGUCCUCCc- -3' miRNA: 3'- cuaucUUUGGCGGGUU------UCAGGAGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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