Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24471 | 3' | -51 | NC_005264.1 | + | 102 | 0.66 | 0.993734 |
Target: 5'- --cAGAGAUagcuaGCCCAuGGagCUCCGCg -3' miRNA: 3'- cuaUCUUUGg----CGGGUuUCagGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 2561 | 0.66 | 0.990447 |
Target: 5'- --cGGGGuacuCCGagucuUCAGAGUCCUCCGCc -3' miRNA: 3'- cuaUCUUu---GGCg----GGUUUCAGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 5075 | 0.69 | 0.94647 |
Target: 5'- --aGGcgGCCaGCCCGuccggggagGGGUCCUCUACg -3' miRNA: 3'- cuaUCuuUGG-CGGGU---------UUCAGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 7205 | 0.67 | 0.984119 |
Target: 5'- cGAUA--AACUGaUCCAGGG-CCUCCACg -3' miRNA: 3'- -CUAUcuUUGGC-GGGUUUCaGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 7511 | 0.66 | 0.990447 |
Target: 5'- aGUAGuAACCGCCCcacauuUCCUCUAUu -3' miRNA: 3'- cUAUCuUUGGCGGGuuuc--AGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 11002 | 0.68 | 0.97759 |
Target: 5'- --cGGAGcgGCgGCCCc-AGUCUUCCGCu -3' miRNA: 3'- cuaUCUU--UGgCGGGuuUCAGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 11302 | 0.69 | 0.960076 |
Target: 5'- gGGUAGGGcguccacGCCGCCCAugaguucuagcuuGUCCUCUAg -3' miRNA: 3'- -CUAUCUU-------UGGCGGGUuu-----------CAGGAGGUg -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 12903 | 0.71 | 0.888311 |
Target: 5'- ----cGAGCCGCCCGGccucgcAGUCCUCCc- -3' miRNA: 3'- cuaucUUUGGCGGGUU------UCAGGAGGug -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 13987 | 0.66 | 0.992759 |
Target: 5'- ---cGGggUCGCCCAGA--CCUCCAa -3' miRNA: 3'- cuauCUuuGGCGGGUUUcaGGAGGUg -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 16021 | 0.74 | 0.758353 |
Target: 5'- ---cGAGACCGCCCAaaaugagcaGAGUCaaagcuaUCCACa -3' miRNA: 3'- cuauCUUUGGCGGGU---------UUCAGg------AGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 33966 | 0.69 | 0.955036 |
Target: 5'- cGAUAGggGCCGCUUGAc--CCUCuCGCg -3' miRNA: 3'- -CUAUCuuUGGCGGGUUucaGGAG-GUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 34069 | 0.7 | 0.941809 |
Target: 5'- uGUGGAAGCCGCgCAcuggcgcgaAGGaCUUCCACg -3' miRNA: 3'- cUAUCUUUGGCGgGU---------UUCaGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 34367 | 0.66 | 0.992759 |
Target: 5'- ---cGAGACCccaCCCAgGAGuucuUCCUCCACg -3' miRNA: 3'- cuauCUUUGGc--GGGU-UUC----AGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 36341 | 0.67 | 0.979954 |
Target: 5'- --aGGAGGCCGCaCGAcGUUCUCCGg -3' miRNA: 3'- cuaUCUUUGGCGgGUUuCAGGAGGUg -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 36721 | 0.66 | 0.991666 |
Target: 5'- -uUGGAAACCGaaaCCucAGUUCcCCGCa -3' miRNA: 3'- cuAUCUUUGGCg--GGuuUCAGGaGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 37364 | 0.68 | 0.96606 |
Target: 5'- ------cGCCGCCgaGGAGUUCUCCGCc -3' miRNA: 3'- cuaucuuUGGCGGg-UUUCAGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 40719 | 0.79 | 0.518137 |
Target: 5'- --cGGGAAUCGCCCGAacgGGUCCUCgGCc -3' miRNA: 3'- cuaUCUUUGGCGGGUU---UCAGGAGgUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 54855 | 0.68 | 0.97759 |
Target: 5'- -cUGGGAGCCGCCCGca----UCCACg -3' miRNA: 3'- cuAUCUUUGGCGGGUuucaggAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 58986 | 1.09 | 0.007971 |
Target: 5'- aGAUAGAAACCGCCCAAAGUCCUCCACc -3' miRNA: 3'- -CUAUCUUUGGCGGGUUUCAGGAGGUG- -5' |
|||||||
24471 | 3' | -51 | NC_005264.1 | + | 64399 | 0.66 | 0.989092 |
Target: 5'- -cUGGAAGcCCGgCCAAGG-CCgacgCCGCg -3' miRNA: 3'- cuAUCUUU-GGCgGGUUUCaGGa---GGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home