miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24471 3' -51 NC_005264.1 + 155747 0.66 0.991666
Target:  5'- -uUGGAAACCGaaaCCucAGUUCcCCGCa -3'
miRNA:   3'- cuAUCUUUGGCg--GGuuUCAGGaGGUG- -5'
24471 3' -51 NC_005264.1 + 155368 0.67 0.979954
Target:  5'- --aGGAGGCCGCaCGAcGUUCUCCGg -3'
miRNA:   3'- cuaUCUUUGGCGgGUUuCAGGAGGUg -5'
24471 3' -51 NC_005264.1 + 81233 0.67 0.982128
Target:  5'- -uUGGAcACCGCCUAAggguuucgagacAGUCUUCCcCg -3'
miRNA:   3'- cuAUCUuUGGCGGGUU------------UCAGGAGGuG- -5'
24471 3' -51 NC_005264.1 + 7205 0.67 0.984119
Target:  5'- cGAUA--AACUGaUCCAGGG-CCUCCACg -3'
miRNA:   3'- -CUAUcuUUGGC-GGGUUUCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 103814 0.67 0.985937
Target:  5'- --cGGAGACCGaCCUGAcgcgccugCCUCCGCg -3'
miRNA:   3'- cuaUCUUUGGC-GGGUUuca-----GGAGGUG- -5'
24471 3' -51 NC_005264.1 + 64399 0.66 0.989092
Target:  5'- -cUGGAAGcCCGgCCAAGG-CCgacgCCGCg -3'
miRNA:   3'- cuAUCUUU-GGCgGGUUUCaGGa---GGUG- -5'
24471 3' -51 NC_005264.1 + 121588 0.66 0.990447
Target:  5'- --cGGGGuacuCCGagucuUCAGAGUCCUCCGCc -3'
miRNA:   3'- cuaUCUUu---GGCg----GGUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 7511 0.66 0.990447
Target:  5'- aGUAGuAACCGCCCcacauuUCCUCUAUu -3'
miRNA:   3'- cUAUCuUUGGCGGGuuuc--AGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 92725 0.66 0.991666
Target:  5'- --gGGAGuacGCgGCagcucgaUAAGGUCCUCCGCg -3'
miRNA:   3'- cuaUCUU---UGgCGg------GUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 11002 0.68 0.97759
Target:  5'- --cGGAGcgGCgGCCCc-AGUCUUCCGCu -3'
miRNA:   3'- cuaUCUU--UGgCGGGuuUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 54855 0.68 0.97759
Target:  5'- -cUGGGAGCCGCCCGca----UCCACg -3'
miRNA:   3'- cuAUCUUUGGCGGGUuucaggAGGUG- -5'
24471 3' -51 NC_005264.1 + 139177 0.68 0.977093
Target:  5'- cAUAGAAGgCGCCCAuaccgccaugccGGUCCUgUACu -3'
miRNA:   3'- cUAUCUUUgGCGGGUu-----------UCAGGAgGUG- -5'
24471 3' -51 NC_005264.1 + 131929 0.71 0.888311
Target:  5'- ----cGAGCCGCCCGGccucgcAGUCCUCCc- -3'
miRNA:   3'- cuaucUUUGGCGGGUU------UCAGGAGGug -5'
24471 3' -51 NC_005264.1 + 34069 0.7 0.941809
Target:  5'- uGUGGAAGCCGCgCAcuggcgcgaAGGaCUUCCACg -3'
miRNA:   3'- cUAUCUUUGGCGgGU---------UUCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 124102 0.69 0.94647
Target:  5'- --aGGcgGCCaGCCCGuccggggagGGGUCCUCUACg -3'
miRNA:   3'- cuaUCuuUGG-CGGGU---------UUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 70794 0.69 0.950878
Target:  5'- --aAGGAgcGCgGCCCAccGaCCUCCACa -3'
miRNA:   3'- cuaUCUU--UGgCGGGUuuCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 152993 0.69 0.955036
Target:  5'- cGAUAGggGCCGCUUGAc--CCUCuCGCg -3'
miRNA:   3'- -CUAUCuuUGGCGGGUUucaGGAG-GUG- -5'
24471 3' -51 NC_005264.1 + 11302 0.69 0.960076
Target:  5'- gGGUAGGGcguccacGCCGCCCAugaguucuagcuuGUCCUCUAg -3'
miRNA:   3'- -CUAUCUU-------UGGCGGGUuu-----------CAGGAGGUg -5'
24471 3' -51 NC_005264.1 + 156391 0.68 0.96606
Target:  5'- ------cGCCGCCgaGGAGUUCUCCGCc -3'
miRNA:   3'- cuaucuuUGGCGGg-UUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 140601 0.68 0.975026
Target:  5'- -uUAGAggcGACCGCCCAgaccgccgacGAGgcgacgaCUCCACu -3'
miRNA:   3'- cuAUCU---UUGGCGGGU----------UUCag-----GAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.