miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24471 3' -51 NC_005264.1 + 34367 0.66 0.992759
Target:  5'- ---cGAGACCccaCCCAgGAGuucuUCCUCCACg -3'
miRNA:   3'- cuauCUUUGGc--GGGU-UUC----AGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 87523 0.74 0.787553
Target:  5'- cGAUcGAugAGCCGCCCGcggccuccgagGAGUCgUCCGCa -3'
miRNA:   3'- -CUAuCU--UUGGCGGGU-----------UUCAGgAGGUG- -5'
24471 3' -51 NC_005264.1 + 16021 0.74 0.758353
Target:  5'- ---cGAGACCGCCCAaaaugagcaGAGUCaaagcuaUCCACa -3'
miRNA:   3'- cuauCUUUGGCGGGU---------UUCAGg------AGGUG- -5'
24471 3' -51 NC_005264.1 + 58986 1.09 0.007971
Target:  5'- aGAUAGAAACCGCCCAAAGUCCUCCACc -3'
miRNA:   3'- -CUAUCUUUGGCGGGUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 2561 0.66 0.990447
Target:  5'- --cGGGGuacuCCGagucuUCAGAGUCCUCCGCc -3'
miRNA:   3'- cuaUCUUu---GGCg----GGUUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 93620 0.67 0.979954
Target:  5'- --cAGcuGGCCGCUgAGcuGUCCUCCGCa -3'
miRNA:   3'- cuaUCu-UUGGCGGgUUu-CAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 82918 0.68 0.972255
Target:  5'- aGUGGAGuCCGCCgCAGAcGUCggCCACg -3'
miRNA:   3'- cUAUCUUuGGCGG-GUUU-CAGgaGGUG- -5'
24471 3' -51 NC_005264.1 + 98022 0.68 0.96606
Target:  5'- --cGGAAACCGUCguGAGcCCUgCGCu -3'
miRNA:   3'- cuaUCUUUGGCGGguUUCaGGAgGUG- -5'
24471 3' -51 NC_005264.1 + 116233 0.69 0.956631
Target:  5'- ---cGGAGCCGUCCucgccccgcagggacAGAG-CCUCCGCa -3'
miRNA:   3'- cuauCUUUGGCGGG---------------UUUCaGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 5075 0.69 0.94647
Target:  5'- --aGGcgGCCaGCCCGuccggggagGGGUCCUCUACg -3'
miRNA:   3'- cuaUCuuUGG-CGGGU---------UUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 112002 0.69 0.962622
Target:  5'- uGUGG--GCCGuaaCCCAGuuagGGUCCUCCGCc -3'
miRNA:   3'- cUAUCuuUGGC---GGGUU----UCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 94107 0.66 0.991666
Target:  5'- -------cCCGCCCGAGGUUCUggcgCCGCu -3'
miRNA:   3'- cuaucuuuGGCGGGUUUCAGGA----GGUG- -5'
24471 3' -51 NC_005264.1 + 145397 0.7 0.941809
Target:  5'- cGUAcAGACUGCCCAGGG-CgUCCGCu -3'
miRNA:   3'- cUAUcUUUGGCGGGUUUCaGgAGGUG- -5'
24471 3' -51 NC_005264.1 + 36721 0.66 0.991666
Target:  5'- -uUGGAAACCGaaaCCucAGUUCcCCGCa -3'
miRNA:   3'- cuAUCUUUGGCg--GGuuUCAGGaGGUG- -5'
24471 3' -51 NC_005264.1 + 37364 0.68 0.96606
Target:  5'- ------cGCCGCCgaGGAGUUCUCCGCc -3'
miRNA:   3'- cuaucuuUGGCGGg-UUUCAGGAGGUG- -5'
24471 3' -51 NC_005264.1 + 12903 0.71 0.888311
Target:  5'- ----cGAGCCGCCCGGccucgcAGUCCUCCc- -3'
miRNA:   3'- cuaucUUUGGCGGGUU------UCAGGAGGug -5'
24471 3' -51 NC_005264.1 + 40719 0.79 0.518137
Target:  5'- --cGGGAAUCGCCCGAacgGGUCCUCgGCc -3'
miRNA:   3'- cuaUCUUUGGCGGGUU---UCAGGAGgUG- -5'
24471 3' -51 NC_005264.1 + 159422 0.66 0.990447
Target:  5'- aGUGGGGcgcGCCGCCUuccauGGUCgUUCCGCu -3'
miRNA:   3'- cUAUCUU---UGGCGGGuu---UCAG-GAGGUG- -5'
24471 3' -51 NC_005264.1 + 36341 0.67 0.979954
Target:  5'- --aGGAGGCCGCaCGAcGUUCUCCGg -3'
miRNA:   3'- cuaUCUUUGGCGgGUUuCAGGAGGUg -5'
24471 3' -51 NC_005264.1 + 33966 0.69 0.955036
Target:  5'- cGAUAGggGCCGCUUGAc--CCUCuCGCg -3'
miRNA:   3'- -CUAUCuuUGGCGGGUUucaGGAG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.