miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24471 5' -61.1 NC_005264.1 + 32884 0.65 0.741653
Target:  5'- uGGAGGCAGGCgcccagacuguauauGCGUUcucgaucgcgcagGGGUCGcggggcgccgcgugaGUCUg -3'
miRNA:   3'- gCCUCCGUCCG---------------CGCAG-------------UCCAGC---------------CAGA- -5'
24471 5' -61.1 NC_005264.1 + 27932 0.66 0.735102
Target:  5'- gCGGuguuGGCGuucuGCGCGUCGguGGUCGuGUCg -3'
miRNA:   3'- -GCCu---CCGUc---CGCGCAGU--CCAGC-CAGa -5'
24471 5' -61.1 NC_005264.1 + 140782 0.66 0.725674
Target:  5'- cCGGcGGC-GGCGCuaccGUCcaaGGcGUCGGUCUg -3'
miRNA:   3'- -GCCuCCGuCCGCG----CAG---UC-CAGCCAGA- -5'
24471 5' -61.1 NC_005264.1 + 91062 0.66 0.725674
Target:  5'- -cGAGGCGcuucugcaacGGCGCcagCAGGUCGG-CUa -3'
miRNA:   3'- gcCUCCGU----------CCGCGca-GUCCAGCCaGA- -5'
24471 5' -61.1 NC_005264.1 + 139119 0.66 0.696978
Target:  5'- gCGGcGGCgugugcccuuuGGGCGUugaGGGUCGGUCg -3'
miRNA:   3'- -GCCuCCG-----------UCCGCGcagUCCAGCCAGa -5'
24471 5' -61.1 NC_005264.1 + 116433 0.66 0.696978
Target:  5'- uGGGGGCgucuggccgcggGGGCGaCGaUCGGGgCGGUUg -3'
miRNA:   3'- gCCUCCG------------UCCGC-GC-AGUCCaGCCAGa -5'
24471 5' -61.1 NC_005264.1 + 82364 0.66 0.687302
Target:  5'- --cAGGCAGGCGCGUCGauccGGUgcCGGgcgCa -3'
miRNA:   3'- gccUCCGUCCGCGCAGU----CCA--GCCa--Ga -5'
24471 5' -61.1 NC_005264.1 + 44885 0.66 0.686332
Target:  5'- gGGAGGCGGGCcCGUCgucgucuGGGgCGGg-- -3'
miRNA:   3'- gCCUCCGUCCGcGCAG-------UCCaGCCaga -5'
24471 5' -61.1 NC_005264.1 + 19417 0.67 0.661967
Target:  5'- gGGAGGCgAGGCGCcggguguggccgcggGgcgCGGGUgGGUUUc -3'
miRNA:   3'- gCCUCCG-UCCGCG---------------Ca--GUCCAgCCAGA- -5'
24471 5' -61.1 NC_005264.1 + 139460 0.67 0.638445
Target:  5'- aGGGcGGcCAGGCGUGUCuGGaUCGGa-- -3'
miRNA:   3'- gCCU-CC-GUCCGCGCAGuCC-AGCCaga -5'
24471 5' -61.1 NC_005264.1 + 18526 0.69 0.516597
Target:  5'- uCGGGGGCgccgucucccccugaGGGCGCGcCGGcGUCaGUCg -3'
miRNA:   3'- -GCCUCCG---------------UCCGCGCaGUC-CAGcCAGa -5'
24471 5' -61.1 NC_005264.1 + 48627 0.69 0.512853
Target:  5'- gGGAGGUGGGCaaGcCGGcGUCGGUUg -3'
miRNA:   3'- gCCUCCGUCCGcgCaGUC-CAGCCAGa -5'
24471 5' -61.1 NC_005264.1 + 118643 0.71 0.440642
Target:  5'- gGGAGGgGGGgGgggaagagauCGUUAGGUCGGUUa -3'
miRNA:   3'- gCCUCCgUCCgC----------GCAGUCCAGCCAGa -5'
24471 5' -61.1 NC_005264.1 + 45162 0.71 0.41508
Target:  5'- gCGGAGGCAGGagaGCGcggCAGcgaaCGGUCUg -3'
miRNA:   3'- -GCCUCCGUCCg--CGCa--GUCca--GCCAGA- -5'
24471 5' -61.1 NC_005264.1 + 93244 0.72 0.35685
Target:  5'- cCGGGcGGCGcccucgucGGCGCGUUcgcgcaaccugaauAGGUCGGUCa -3'
miRNA:   3'- -GCCU-CCGU--------CCGCGCAG--------------UCCAGCCAGa -5'
24471 5' -61.1 NC_005264.1 + 59020 1.07 0.001684
Target:  5'- gCGGAGGCAGGCGCGUCAGGUCGGUCUc -3'
miRNA:   3'- -GCCUCCGUCCGCGCAGUCCAGCCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.