miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24472 3' -53.2 NC_005264.1 + 57338 0.65 0.986903
Target:  5'- cGCGCGCauccucuuc--CUCCGCCGGa -3'
miRNA:   3'- -CGCGCGcuuugccuuuuGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 6202 0.66 0.986098
Target:  5'- cCGUGCGAGACGcGuccuuuGACcccCCGCCGcGg -3'
miRNA:   3'- cGCGCGCUUUGC-Cuu----UUGa--GGCGGC-C- -5'
24472 3' -53.2 NC_005264.1 + 82056 0.66 0.986098
Target:  5'- gGCGCGCcuccucuaGAGcGCGGAcaAGAuCUUCGCCGc -3'
miRNA:   3'- -CGCGCG--------CUU-UGCCU--UUU-GAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 23816 0.66 0.986098
Target:  5'- cGCGCGCGAGAacccuCGGGAGcgUUgGCCc- -3'
miRNA:   3'- -CGCGCGCUUU-----GCCUUUugAGgCGGcc -5'
24472 3' -53.2 NC_005264.1 + 71408 0.66 0.986098
Target:  5'- gGCcCGUGGcuauGACac-AGACUCCGCCGGu -3'
miRNA:   3'- -CGcGCGCU----UUGccuUUUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 12710 0.66 0.986098
Target:  5'- cGUGCGCGGGcccuCuGAcauGCUCCGCCc- -3'
miRNA:   3'- -CGCGCGCUUu---GcCUuu-UGAGGCGGcc -5'
24472 3' -53.2 NC_005264.1 + 125229 0.66 0.986098
Target:  5'- cCGUGCGAGACGcGuccuuuGACcccCCGCCGcGg -3'
miRNA:   3'- cGCGCGCUUUGC-Cuu----UUGa--GGCGGC-C- -5'
24472 3' -53.2 NC_005264.1 + 122795 0.66 0.986098
Target:  5'- gGCGCuGCGGGcccuUGGucGACcgCCGCCGa -3'
miRNA:   3'- -CGCG-CGCUUu---GCCuuUUGa-GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 25717 0.66 0.986098
Target:  5'- cGCGgGCGGcAGCGGugcguACUCgGUCGcGg -3'
miRNA:   3'- -CGCgCGCU-UUGCCuuu--UGAGgCGGC-C- -5'
24472 3' -53.2 NC_005264.1 + 17282 0.66 0.986098
Target:  5'- -gGCGaCGggGCGGAGGGCUgC-CCa- -3'
miRNA:   3'- cgCGC-GCuuUGCCUUUUGAgGcGGcc -5'
24472 3' -53.2 NC_005264.1 + 106520 0.66 0.986098
Target:  5'- gGUGCGCGAcGGCGGcAGcGCggCCGCgGa -3'
miRNA:   3'- -CGCGCGCU-UUGCC-UUuUGa-GGCGgCc -5'
24472 3' -53.2 NC_005264.1 + 3769 0.66 0.986098
Target:  5'- gGCGCuGCGGGcccuUGGucGACcgCCGCCGa -3'
miRNA:   3'- -CGCG-CGCUUu---GCCuuUUGa-GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 102285 0.66 0.985933
Target:  5'- uGUGCaGCGAAACGGGcacaggcgugccaGAgcgcaaugGCUgCGCCGa -3'
miRNA:   3'- -CGCG-CGCUUUGCCU-------------UU--------UGAgGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 12537 0.66 0.984375
Target:  5'- aGC-CGguaGGAGCGGggGGCgUUCGCCGc -3'
miRNA:   3'- -CGcGCg--CUUUGCCuuUUG-AGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 112603 0.66 0.984375
Target:  5'- -gGUGCacaaacugGGAGCGGG--GC-CCGCCGGu -3'
miRNA:   3'- cgCGCG--------CUUUGCCUuuUGaGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 72828 0.66 0.984375
Target:  5'- aGCGCGCGAcaacCGGAaacGAGCgUCgCGCuCGa -3'
miRNA:   3'- -CGCGCGCUuu--GCCU---UUUG-AG-GCG-GCc -5'
24472 3' -53.2 NC_005264.1 + 131564 0.66 0.984375
Target:  5'- aGC-CGguaGGAGCGGggGGCgUUCGCCGc -3'
miRNA:   3'- -CGcGCg--CUUUGCCuuUUG-AGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 160337 0.66 0.982495
Target:  5'- cCGCGCuGAAgucGCGcGAGGC-CCGCCGa -3'
miRNA:   3'- cGCGCG-CUU---UGCcUUUUGaGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 19396 0.66 0.982495
Target:  5'- gGCGCauugGCGAcauGAUGGggGagGCgaggCGCCGGg -3'
miRNA:   3'- -CGCG----CGCU---UUGCCuuU--UGag--GCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 161679 0.66 0.982495
Target:  5'- uCGCGCGc--CGGcAGACUggCgGCCGGa -3'
miRNA:   3'- cGCGCGCuuuGCCuUUUGA--GgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.