miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24472 3' -53.2 NC_005264.1 + 57431 1.12 0.004683
Target:  5'- gGCGCGCGAAACGGAAAACUCCGCCGGc -3'
miRNA:   3'- -CGCGCGCUUUGCCUUUUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 18569 0.86 0.193181
Target:  5'- uGCGCGCGgcACGGAGAACUCggUGUCGGu -3'
miRNA:   3'- -CGCGCGCuuUGCCUUUUGAG--GCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 127868 0.84 0.264869
Target:  5'- gGCGCGCGAAugGGGu--CUCCGUCGc -3'
miRNA:   3'- -CGCGCGCUUugCCUuuuGAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 12117 0.81 0.34119
Target:  5'- cGCGCGCGAccuuuGGCGGgcAGCcCCGCCGa -3'
miRNA:   3'- -CGCGCGCU-----UUGCCuuUUGaGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 131144 0.81 0.34119
Target:  5'- cGCGCGCGAccuuuGGCGGgcAGCcCCGCCGa -3'
miRNA:   3'- -CGCGCGCU-----UUGCCuuUUGaGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 145005 0.81 0.348094
Target:  5'- cGCGCGCGAGAUGGAGGAuCUagcccccUCGUCGGa -3'
miRNA:   3'- -CGCGCGCUUUGCCUUUU-GA-------GGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 132310 0.81 0.348867
Target:  5'- cGCGCcaGCGAGGCGGGucgugGAGCUCC-CCGGa -3'
miRNA:   3'- -CGCG--CGCUUUGCCU-----UUUGAGGcGGCC- -5'
24472 3' -53.2 NC_005264.1 + 13283 0.81 0.348867
Target:  5'- cGCGCcaGCGAGGCGGGucgugGAGCUCC-CCGGa -3'
miRNA:   3'- -CGCG--CGCUUUGCCU-----UUUGAGGcGGCC- -5'
24472 3' -53.2 NC_005264.1 + 149435 0.81 0.356667
Target:  5'- cGCGCGcCGguGCGGAGAGCUgCGgCGGa -3'
miRNA:   3'- -CGCGC-GCuuUGCCUUUUGAgGCgGCC- -5'
24472 3' -53.2 NC_005264.1 + 30408 0.81 0.356667
Target:  5'- cGCGCGcCGguGCGGAGAGCUgCGgCGGa -3'
miRNA:   3'- -CGCGC-GCuuUGCCUUUUGAgGCgGCC- -5'
24472 3' -53.2 NC_005264.1 + 152753 0.79 0.449301
Target:  5'- gGC-CGCGAugcccccGGCGGGAGAUUCCGCCGcGg -3'
miRNA:   3'- -CGcGCGCU-------UUGCCUUUUGAGGCGGC-C- -5'
24472 3' -53.2 NC_005264.1 + 26197 0.77 0.565741
Target:  5'- aCGCGCGu--CG--AGGCUCCGCCGGg -3'
miRNA:   3'- cGCGCGCuuuGCcuUUUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 137704 0.77 0.575797
Target:  5'- cGCGCGCGAGGauGAAuaaaaacucgGACUUCGCCGc -3'
miRNA:   3'- -CGCGCGCUUUgcCUU----------UUGAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 33574 0.76 0.58286
Target:  5'- uGCGCGCGAgguAGCGGAgccauguucggacgAGGCUugCCGCCGc -3'
miRNA:   3'- -CGCGCGCU---UUGCCU--------------UUUGA--GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 95341 0.76 0.596021
Target:  5'- gGCGcCGCGAAACGGA---CUCgGCgGGg -3'
miRNA:   3'- -CGC-GCGCUUUGCCUuuuGAGgCGgCC- -5'
24472 3' -53.2 NC_005264.1 + 153476 0.75 0.636726
Target:  5'- cGCGCuCGGGACGaucuGCUCUGCCGGc -3'
miRNA:   3'- -CGCGcGCUUUGCcuuuUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 60238 0.75 0.657087
Target:  5'- aGCGcCGCGAGA-GGcuauuaguAAAGCUCCGUCGGc -3'
miRNA:   3'- -CGC-GCGCUUUgCC--------UUUUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 139575 0.75 0.666228
Target:  5'- cGCGCGCGAaauagacAACGuGAccuGCUCCGUCGu -3'
miRNA:   3'- -CGCGCGCU-------UUGC-CUuu-UGAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 18550 0.74 0.697505
Target:  5'- gGCGCGCcggcgucagucGGAGCGGca---UCCGCCGGc -3'
miRNA:   3'- -CGCGCG-----------CUUUGCCuuuugAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 134810 0.74 0.707495
Target:  5'- cGCGCGCGc--CGGAAGACcucCCGCCc- -3'
miRNA:   3'- -CGCGCGCuuuGCCUUUUGa--GGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.