miRNA display CGI


Results 21 - 40 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24472 3' -53.2 NC_005264.1 + 51780 0.66 0.982495
Target:  5'- uCGCGCG--GCGGc--ACUUCGuCCGGc -3'
miRNA:   3'- cGCGCGCuuUGCCuuuUGAGGC-GGCC- -5'
24472 3' -53.2 NC_005264.1 + 42653 0.66 0.982495
Target:  5'- uCGCGCGc--CGGcAGACUggCgGCCGGa -3'
miRNA:   3'- cGCGCGCuuuGCCuUUUGA--GgCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 13194 0.66 0.982495
Target:  5'- uGCGCGCGGAuccguCGccgccGCcgUCGCCGGg -3'
miRNA:   3'- -CGCGCGCUUu----GCcuuu-UGa-GGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 43829 0.66 0.982495
Target:  5'- gGCGCGCaaccuGCGGuuauaaagaagGGGGCUgCCGCgGGg -3'
miRNA:   3'- -CGCGCGcuu--UGCC-----------UUUUGA-GGCGgCC- -5'
24472 3' -53.2 NC_005264.1 + 132221 0.66 0.982495
Target:  5'- uGCGCGCGGAuccguCGccgccGCcgUCGCCGGg -3'
miRNA:   3'- -CGCGCGCUUu----GCcuuu-UGa-GGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 133839 0.66 0.982495
Target:  5'- aCGCGCGAuGgGGAAAAacauacCUCCagGCCGc -3'
miRNA:   3'- cGCGCGCUuUgCCUUUU------GAGG--CGGCc -5'
24472 3' -53.2 NC_005264.1 + 160337 0.66 0.982495
Target:  5'- cCGCGCuGAAgucGCGcGAGGC-CCGCCGa -3'
miRNA:   3'- cGCGCG-CUU---UGCcUUUUGaGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 19396 0.66 0.982495
Target:  5'- gGCGCauugGCGAcauGAUGGggGagGCgaggCGCCGGg -3'
miRNA:   3'- -CGCG----CGCU---UUGCCuuU--UGag--GCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 161679 0.66 0.982495
Target:  5'- uCGCGCGc--CGGcAGACUggCgGCCGGa -3'
miRNA:   3'- cGCGCGCuuuGCCuUUUGA--GgCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 45782 0.66 0.98045
Target:  5'- gGCGC-CGGAGCGGcuauuGCggucugggCCGCCGc -3'
miRNA:   3'- -CGCGcGCUUUGCCuuu--UGa-------GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 78689 0.66 0.98045
Target:  5'- cGCGCGCGcuGCGacc-ACUUC-CCGGg -3'
miRNA:   3'- -CGCGCGCuuUGCcuuuUGAGGcGGCC- -5'
24472 3' -53.2 NC_005264.1 + 111049 0.66 0.98045
Target:  5'- uCGCGCGGAcucgcCGGAcGAagugCCGCCGc -3'
miRNA:   3'- cGCGCGCUUu----GCCUuUUga--GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 23188 0.66 0.98045
Target:  5'- uGCGCcCGGcuCGGAAAugUuuuggaCCGCCGu -3'
miRNA:   3'- -CGCGcGCUuuGCCUUUugA------GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 69588 0.66 0.98045
Target:  5'- uUGCGCGAAcGCGccgacGAGGGCgCCGcCCGGc -3'
miRNA:   3'- cGCGCGCUU-UGC-----CUUUUGaGGC-GGCC- -5'
24472 3' -53.2 NC_005264.1 + 34987 0.66 0.98045
Target:  5'- uCGCGCGc--CGGGuucuAgaCCGCCGGc -3'
miRNA:   3'- cGCGCGCuuuGCCUuu--UgaGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 145938 0.66 0.978461
Target:  5'- cGUcCGCGGccGACGGGAAuuucucugcugcgacCUUCGCCGGc -3'
miRNA:   3'- -CGcGCGCU--UUGCCUUUu--------------GAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 81060 0.66 0.978231
Target:  5'- gGCGCGUGGuuuaucGACGGcAAccGgUCUGCCGa -3'
miRNA:   3'- -CGCGCGCU------UUGCCuUU--UgAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 68943 0.66 0.978231
Target:  5'- aCGCGCuguaucAUGGAGAAguUUUCGCCGGc -3'
miRNA:   3'- cGCGCGcuu---UGCCUUUU--GAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 124724 0.66 0.978231
Target:  5'- aGCGCGCGGgcaacgccuggcGGCGGAAAcaaauccucuCUCCGuuCCGu -3'
miRNA:   3'- -CGCGCGCU------------UUGCCUUUu---------GAGGC--GGCc -5'
24472 3' -53.2 NC_005264.1 + 156388 0.66 0.978231
Target:  5'- cCGCGCcgccgaGGAGuuCUCCGCCa- -3'
miRNA:   3'- cGCGCGcuuug-CCUUuuGAGGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.