miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24472 3' -53.2 NC_005264.1 + 11765 0.72 0.819857
Target:  5'- gGCGCgGCGAAACGGuuGacGCUCUcguagGCCGa -3'
miRNA:   3'- -CGCG-CGCUUUGCCuuU--UGAGG-----CGGCc -5'
24472 3' -53.2 NC_005264.1 + 85592 0.74 0.737051
Target:  5'- aCGUGCuGGGCauccugaucaGGAAAGCUCCGCCGa -3'
miRNA:   3'- cGCGCGcUUUG----------CCUUUUGAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 82366 0.73 0.765792
Target:  5'- gGCG-GCGAAGCGGAGcACUUCGCa-- -3'
miRNA:   3'- -CGCgCGCUUUGCCUUuUGAGGCGgcc -5'
24472 3' -53.2 NC_005264.1 + 50567 0.73 0.775149
Target:  5'- cGCGCGCGu-GCGGGAAGCgcaCGCgGc -3'
miRNA:   3'- -CGCGCGCuuUGCCUUUUGag-GCGgCc -5'
24472 3' -53.2 NC_005264.1 + 120203 0.73 0.784379
Target:  5'- gGCGCGCGAuggggguacgcAGCGGAccGGGCgUCCGCgGc -3'
miRNA:   3'- -CGCGCGCU-----------UUGCCU--UUUG-AGGCGgCc -5'
24472 3' -53.2 NC_005264.1 + 125470 0.73 0.784379
Target:  5'- gGCGuCGCu-GGCGGAGAACUCC-UCGGc -3'
miRNA:   3'- -CGC-GCGcuUUGCCUUUUGAGGcGGCC- -5'
24472 3' -53.2 NC_005264.1 + 93911 0.72 0.802423
Target:  5'- uGCGUaaaccuGC-AGACGGAAAGCUUCGCCa- -3'
miRNA:   3'- -CGCG------CGcUUUGCCUUUUGAGGCGGcc -5'
24472 3' -53.2 NC_005264.1 + 126076 0.72 0.802423
Target:  5'- uGCGCGC-AAGCGGc-GACggCGCCGGc -3'
miRNA:   3'- -CGCGCGcUUUGCCuuUUGagGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 154813 0.72 0.811221
Target:  5'- aGgGCGCGGuggcgccgucguGGCGGGcgcCUCUGCCGGc -3'
miRNA:   3'- -CgCGCGCU------------UUGCCUuuuGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 102932 0.74 0.727277
Target:  5'- aGCuGCGCGGAGCGGAAAACgugCaCGUggUGGu -3'
miRNA:   3'- -CG-CGCGCUUUGCCUUUUGa--G-GCG--GCC- -5'
24472 3' -53.2 NC_005264.1 + 5542 0.74 0.717422
Target:  5'- uCGCGCGGAGCGGGuuucuCUUCGCaGGu -3'
miRNA:   3'- cGCGCGCUUUGCCUuuu--GAGGCGgCC- -5'
24472 3' -53.2 NC_005264.1 + 3828 0.74 0.714451
Target:  5'- uGCGCGCGGAgaccugcuccuggcAUGGGuc-CUgCGCCGGg -3'
miRNA:   3'- -CGCGCGCUU--------------UGCCUuuuGAgGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 145005 0.81 0.348094
Target:  5'- cGCGCGCGAGAUGGAGGAuCUagcccccUCGUCGGa -3'
miRNA:   3'- -CGCGCGCUUUGCCUUUU-GA-------GGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 132310 0.81 0.348867
Target:  5'- cGCGCcaGCGAGGCGGGucgugGAGCUCC-CCGGa -3'
miRNA:   3'- -CGCG--CGCUUUGCCU-----UUUGAGGcGGCC- -5'
24472 3' -53.2 NC_005264.1 + 149435 0.81 0.356667
Target:  5'- cGCGCGcCGguGCGGAGAGCUgCGgCGGa -3'
miRNA:   3'- -CGCGC-GCuuUGCCUUUUGAgGCgGCC- -5'
24472 3' -53.2 NC_005264.1 + 26197 0.77 0.565741
Target:  5'- aCGCGCGu--CG--AGGCUCCGCCGGg -3'
miRNA:   3'- cGCGCGCuuuGCcuUUUGAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 33574 0.76 0.58286
Target:  5'- uGCGCGCGAgguAGCGGAgccauguucggacgAGGCUugCCGCCGc -3'
miRNA:   3'- -CGCGCGCU---UUGCCU--------------UUUGA--GGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 139575 0.75 0.666228
Target:  5'- cGCGCGCGAaauagacAACGuGAccuGCUCCGUCGu -3'
miRNA:   3'- -CGCGCGCU-------UUGC-CUuu-UGAGGCGGCc -5'
24472 3' -53.2 NC_005264.1 + 18550 0.74 0.697505
Target:  5'- gGCGCGCcggcgucagucGGAGCGGca---UCCGCCGGc -3'
miRNA:   3'- -CGCGCG-----------CUUUGCCuuuugAGGCGGCC- -5'
24472 3' -53.2 NC_005264.1 + 157106 0.74 0.707495
Target:  5'- uGCGCGgcgucaCGGAACGGAGAGaggauuuguuUUCCGCCGc -3'
miRNA:   3'- -CGCGC------GCUUUGCCUUUU----------GAGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.