miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24472 5' -49.8 NC_005264.1 + 146504 0.66 0.998047
Target:  5'- uCCCUGGGccgcgcGGUUcCAGagcUACGCGUc -3'
miRNA:   3'- uGGGACCU------UCAAaGUCgaaAUGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 47681 0.66 0.998047
Target:  5'- cGCgUUGGcGGUUUCcGCUUU-UGCGCc -3'
miRNA:   3'- -UGgGACCuUCAAAGuCGAAAuGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 13698 0.66 0.997664
Target:  5'- gGCCCaGGGAGaacuggCAGCU---CGUGCg -3'
miRNA:   3'- -UGGGaCCUUCaaa---GUCGAaauGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 29759 0.66 0.997623
Target:  5'- uACCCUucucgcgguagGGAugcugUCGGCUUUgcgagccagaaacACGCGCa -3'
miRNA:   3'- -UGGGA-----------CCUucaa-AGUCGAAA-------------UGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 9902 0.66 0.996656
Target:  5'- aGCCCUGGcggcagaAAGg--CGGCgcuaucuCGCGCu -3'
miRNA:   3'- -UGGGACC-------UUCaaaGUCGaaau---GCGCG- -5'
24472 5' -49.8 NC_005264.1 + 128928 0.66 0.996656
Target:  5'- aGCCCUGGcggcagaAAGg--CGGCgcuaucuCGCGCu -3'
miRNA:   3'- -UGGGACC-------UUCaaaGUCGaaau---GCGCG- -5'
24472 5' -49.8 NC_005264.1 + 37949 0.67 0.995458
Target:  5'- gGCCaUGGggGggcggUUAGCcagUUGCGCGg -3'
miRNA:   3'- -UGGgACCuuCaa---AGUCGa--AAUGCGCg -5'
24472 5' -49.8 NC_005264.1 + 162814 0.67 0.995458
Target:  5'- cGCCgUGGGugcggggcgcAGUUUCugucgcgauauAGCgugGCGCGCa -3'
miRNA:   3'- -UGGgACCU----------UCAAAG-----------UCGaaaUGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 98761 0.67 0.995458
Target:  5'- gGCCC-GGAAGg--CGGCUcUGCuGCGg -3'
miRNA:   3'- -UGGGaCCUUCaaaGUCGAaAUG-CGCg -5'
24472 5' -49.8 NC_005264.1 + 43788 0.67 0.995458
Target:  5'- cGCCgUGGGugcggggcgcAGUUUCugucgcgauauAGCgugGCGCGCa -3'
miRNA:   3'- -UGGgACCU----------UCAAAG-----------UCGaaaUGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 9676 0.67 0.9947
Target:  5'- gGCCUUGGggGa---GGCgggcuCGCGCc -3'
miRNA:   3'- -UGGGACCuuCaaagUCGaaau-GCGCG- -5'
24472 5' -49.8 NC_005264.1 + 94524 0.67 0.9947
Target:  5'- gGCCacgUGGGAGgg-CAGCg--GCGcCGCa -3'
miRNA:   3'- -UGGg--ACCUUCaaaGUCGaaaUGC-GCG- -5'
24472 5' -49.8 NC_005264.1 + 7084 0.67 0.9947
Target:  5'- cGCgCUGcggggaacuGAGGUUUCGGUUUccaACGCGCc -3'
miRNA:   3'- -UGgGAC---------CUUCAAAGUCGAAa--UGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 67469 0.67 0.9947
Target:  5'- cACgCCUGGcAGUUU-GGCggcACGCGCc -3'
miRNA:   3'- -UG-GGACCuUCAAAgUCGaaaUGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 126111 0.67 0.9947
Target:  5'- cGCgCUGcggggaacuGAGGUUUCGGUUUccaACGCGCc -3'
miRNA:   3'- -UGgGAC---------CUUCAAAGUCGAAa--UGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 128703 0.67 0.9947
Target:  5'- gGCCUUGGggGa---GGCgggcuCGCGCc -3'
miRNA:   3'- -UGGGACCuuCaaagUCGaaau-GCGCG- -5'
24472 5' -49.8 NC_005264.1 + 125018 0.67 0.993841
Target:  5'- gGCCaagGGGAGUcgUCGGCcccgACGgGCg -3'
miRNA:   3'- -UGGga-CCUUCAa-AGUCGaaa-UGCgCG- -5'
24472 5' -49.8 NC_005264.1 + 12693 0.67 0.993841
Target:  5'- gGCCCUGauuGUUUUGGCg-UGCGCGg -3'
miRNA:   3'- -UGGGACcuuCAAAGUCGaaAUGCGCg -5'
24472 5' -49.8 NC_005264.1 + 17448 0.67 0.993841
Target:  5'- cGCCCUGGGcagucuguacGGUUUCacAGUaa-GCGCGUc -3'
miRNA:   3'- -UGGGACCU----------UCAAAG--UCGaaaUGCGCG- -5'
24472 5' -49.8 NC_005264.1 + 5991 0.67 0.993841
Target:  5'- gGCCaagGGGAGUcgUCGGCcccgACGgGCg -3'
miRNA:   3'- -UGGga-CCUUCAa-AGUCGaaa-UGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.