miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24473 3' -59 NC_005264.1 + 162220 0.66 0.805488
Target:  5'- uGCCUgcgaCgcgGGCCGgcGGGgGGGGGGGg -3'
miRNA:   3'- gCGGGa---Ga--UCGGCauCCUgCUCCCUU- -5'
24473 3' -59 NC_005264.1 + 43193 0.66 0.805488
Target:  5'- uGCCUgcgaCgcgGGCCGgcGGGgGGGGGGGg -3'
miRNA:   3'- gCGGGa---Ga--UCGGCauCCUgCUCCCUU- -5'
24473 3' -59 NC_005264.1 + 105598 0.66 0.769545
Target:  5'- aGCgCCUCaAGaCCGUGGuGCGuGGGAAa -3'
miRNA:   3'- gCG-GGAGaUC-GGCAUCcUGCuCCCUU- -5'
24473 3' -59 NC_005264.1 + 26361 0.66 0.760242
Target:  5'- gGCgUUCcGGCCGUAuGACGAGaGGAGu -3'
miRNA:   3'- gCGgGAGaUCGGCAUcCUGCUC-CCUU- -5'
24473 3' -59 NC_005264.1 + 157365 0.67 0.741318
Target:  5'- gGCCCU--GGCCGUGaugcuGGGCGGcGGGGc -3'
miRNA:   3'- gCGGGAgaUCGGCAU-----CCUGCU-CCCUu -5'
24473 3' -59 NC_005264.1 + 38338 0.67 0.741318
Target:  5'- gGCCCU--GGCCGUGaugcuGGGCGGcGGGGc -3'
miRNA:   3'- gCGGGAgaUCGGCAU-----CCUGCU-CCCUu -5'
24473 3' -59 NC_005264.1 + 121693 0.67 0.706372
Target:  5'- aGUCCUCUGGCCccgaccgcgAGGGCagcgugguggcggagGAGGGAGu -3'
miRNA:   3'- gCGGGAGAUCGGca-------UCCUG---------------CUCCCUU- -5'
24473 3' -59 NC_005264.1 + 2666 0.67 0.706372
Target:  5'- aGUCCUCUGGCCccgaccgcgAGGGCagcgugguggcggagGAGGGAGu -3'
miRNA:   3'- gCGGGAGAUCGGca-------UCCUG---------------CUCCCUU- -5'
24473 3' -59 NC_005264.1 + 52641 0.68 0.662634
Target:  5'- cCGCCC-CU-GCCGuUAGGAUGAGGc-- -3'
miRNA:   3'- -GCGGGaGAuCGGC-AUCCUGCUCCcuu -5'
24473 3' -59 NC_005264.1 + 124126 0.68 0.652604
Target:  5'- gGUCCUCUAcGCCugGGGGCGAgcuGGGAc -3'
miRNA:   3'- gCGGGAGAU-CGGcaUCCUGCU---CCCUu -5'
24473 3' -59 NC_005264.1 + 5099 0.68 0.652604
Target:  5'- gGUCCUCUAcGCCugGGGGCGAgcuGGGAc -3'
miRNA:   3'- gCGGGAGAU-CGGcaUCCUGCU---CCCUu -5'
24473 3' -59 NC_005264.1 + 131553 0.73 0.413669
Target:  5'- uCGCUgcaUCUAGCCgGUAGGAgCGGGGGGc -3'
miRNA:   3'- -GCGGg--AGAUCGG-CAUCCU-GCUCCCUu -5'
24473 3' -59 NC_005264.1 + 12526 0.73 0.413669
Target:  5'- uCGCUgcaUCUAGCCgGUAGGAgCGGGGGGc -3'
miRNA:   3'- -GCGGg--AGAUCGG-CAUCCU-GCUCCCUu -5'
24473 3' -59 NC_005264.1 + 56073 1.06 0.002254
Target:  5'- aCGCCCUCUAGCCGUAGGACGAGGGAAa -3'
miRNA:   3'- -GCGGGAGAUCGGCAUCCUGCUCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.