Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24475 | 3' | -53.6 | NC_005264.1 | + | 3691 | 0.68 | 0.92452 |
Target: 5'- gGCgAGAcGAGGAggaCGGCGAucgaucgugggauGCGGACGa -3' miRNA: 3'- -UGaUCU-CUCCUa--GUCGCUu------------CGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 6782 | 0.66 | 0.971618 |
Target: 5'- aGCcAGGGAuGGGUgCGGCGGcucagAGgGGACGg -3' miRNA: 3'- -UGaUCUCU-CCUA-GUCGCU-----UCgCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 8766 | 0.69 | 0.875824 |
Target: 5'- uCUGGGGAGa---GGCGAacGGCGGGCGu -3' miRNA: 3'- uGAUCUCUCcuagUCGCU--UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 9668 | 0.66 | 0.968667 |
Target: 5'- uCUAGcGAGGccuUgGGgGAGGCGGGCu -3' miRNA: 3'- uGAUCuCUCCu--AgUCgCUUCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 13272 | 0.66 | 0.95852 |
Target: 5'- ---cGAcGAGGGUucgcgcCAGCGAGGCGGGuCGu -3' miRNA: 3'- ugauCU-CUCCUA------GUCGCUUCGCCU-GC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 13551 | 0.7 | 0.836686 |
Target: 5'- --aGGaAGAGGAg-AGCGgcGCGGGCGg -3' miRNA: 3'- ugaUC-UCUCCUagUCGCuuCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 21934 | 0.69 | 0.903168 |
Target: 5'- -gUGGAGcuGGUCGGCGAcuCGGGCGc -3' miRNA: 3'- ugAUCUCucCUAGUCGCUucGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 30901 | 0.74 | 0.622908 |
Target: 5'- cGCgucgGGGGAGGA-CuGCGAGGCcGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUaGuCGCUUCG-CCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 31523 | 0.66 | 0.974363 |
Target: 5'- gGCUcgggcGGGGAGGGccgUUggGGUgGggGCGGACGg -3' miRNA: 3'- -UGA-----UCUCUCCU---AG--UCG-CuuCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 34483 | 0.67 | 0.954687 |
Target: 5'- cGCUucaGGAGGAcguUCGGCGGgaauGGgGGGCGg -3' miRNA: 3'- -UGAuc-UCUCCU---AGUCGCU----UCgCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 36805 | 0.68 | 0.92118 |
Target: 5'- uACUGGAGAGGAgc--CGccGCGGGCc -3' miRNA: 3'- -UGAUCUCUCCUagucGCuuCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 43210 | 0.72 | 0.725409 |
Target: 5'- gGCggggGGGGGGGGggcuaCGGCGGggcuGGCGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUa----GUCGCU----UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 43973 | 0.67 | 0.941779 |
Target: 5'- aACgguGAuGAGGAcgCAgaacGCGAGGCGGACu -3' miRNA: 3'- -UGau-CU-CUCCUa-GU----CGCUUCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 44110 | 0.71 | 0.792804 |
Target: 5'- gACUGGGGAGGG--GGCGGgauAGCGG-CGa -3' miRNA: 3'- -UGAUCUCUCCUagUCGCU---UCGCCuGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 45167 | 0.71 | 0.801008 |
Target: 5'- gGCaGGAGAGcgcggcagcgaacGGUCuggcaguaacAGCGAGGCGGACGa -3' miRNA: 3'- -UGaUCUCUC-------------CUAG----------UCGCUUCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 51832 | 0.67 | 0.941779 |
Target: 5'- --aGGAGAgGGGUgGGCGcuccGCGGGCGu -3' miRNA: 3'- ugaUCUCU-CCUAgUCGCuu--CGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 54354 | 1.09 | 0.005024 |
Target: 5'- cACUAGAGAGGAUCAGCGAAGCGGACGa -3' miRNA: 3'- -UGAUCUCUCCUAGUCGCUUCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 55559 | 0.72 | 0.745219 |
Target: 5'- uACUGGAGGGGGgagcgCGGCccacugcAGCGGACa -3' miRNA: 3'- -UGAUCUCUCCUa----GUCGcu-----UCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 56929 | 0.66 | 0.974363 |
Target: 5'- gGCgUAGAGGGGGcaAGCGGAGacgcaGGAUa -3' miRNA: 3'- -UG-AUCUCUCCUagUCGCUUCg----CCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 63277 | 0.71 | 0.818778 |
Target: 5'- gGCUcgAGAGAGGAcaaccggccccagUCGGgGGAuGCGGACu -3' miRNA: 3'- -UGA--UCUCUCCU-------------AGUCgCUU-CGCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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