Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24475 | 3' | -53.6 | NC_005264.1 | + | 106291 | 0.69 | 0.882298 |
Target: 5'- aACUGGAGAagucGGAg-AGCGAcagcugcGGCGGGCa -3' miRNA: 3'- -UGAUCUCU----CCUagUCGCU-------UCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 8766 | 0.69 | 0.875824 |
Target: 5'- uCUGGGGAGa---GGCGAacGGCGGGCGu -3' miRNA: 3'- uGAUCUCUCcuagUCGCU--UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 127792 | 0.69 | 0.875824 |
Target: 5'- uCUGGGGAGa---GGCGAacGGCGGGCGu -3' miRNA: 3'- uGAUCUCUCcuagUCGCU--UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 117838 | 0.7 | 0.860797 |
Target: 5'- --aGGGGAGGcgCGGCGGAGUGcGCa -3' miRNA: 3'- ugaUCUCUCCuaGUCGCUUCGCcUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 132578 | 0.7 | 0.836686 |
Target: 5'- --aGGaAGAGGAg-AGCGgcGCGGGCGg -3' miRNA: 3'- ugaUC-UCUCCUagUCGCuuCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 13551 | 0.7 | 0.836686 |
Target: 5'- --aGGaAGAGGAg-AGCGgcGCGGGCGg -3' miRNA: 3'- ugaUC-UCUCCUagUCGCuuCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 103687 | 0.7 | 0.835852 |
Target: 5'- aGCUGGGcgagggggaaguuGAGGGcCAGUGGAGCGG-CGg -3' miRNA: 3'- -UGAUCU-------------CUCCUaGUCGCUUCGCCuGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 63277 | 0.71 | 0.818778 |
Target: 5'- gGCUcgAGAGAGGAcaaccggccccagUCGGgGGAuGCGGACu -3' miRNA: 3'- -UGA--UCUCUCCU-------------AGUCgCUU-CGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 45167 | 0.71 | 0.801008 |
Target: 5'- gGCaGGAGAGcgcggcagcgaacGGUCuggcaguaacAGCGAGGCGGACGa -3' miRNA: 3'- -UGaUCUCUC-------------CUAG----------UCGCUUCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 44110 | 0.71 | 0.792804 |
Target: 5'- gACUGGGGAGGG--GGCGGgauAGCGG-CGa -3' miRNA: 3'- -UGAUCUCUCCUagUCGCU---UCGCCuGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 100414 | 0.71 | 0.792804 |
Target: 5'- cACUAGAGcGGAUCaAGUgggugaucguaGAAGCGGAgGg -3' miRNA: 3'- -UGAUCUCuCCUAG-UCG-----------CUUCGCCUgC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 55559 | 0.72 | 0.745219 |
Target: 5'- uACUGGAGGGGGgagcgCGGCccacugcAGCGGACa -3' miRNA: 3'- -UGAUCUCUCCUa----GUCGcu-----UCGCCUGc -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 43210 | 0.72 | 0.725409 |
Target: 5'- gGCggggGGGGGGGGggcuaCGGCGGggcuGGCGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUa----GUCGCU----UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 162237 | 0.72 | 0.725409 |
Target: 5'- gGCggggGGGGGGGGggcuaCGGCGGggcuGGCGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUa----GUCGCU----UCGCCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 30901 | 0.74 | 0.622908 |
Target: 5'- cGCgucgGGGGAGGA-CuGCGAGGCcGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUaGuCGCUUCG-CCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 149927 | 0.74 | 0.622908 |
Target: 5'- cGCgucgGGGGAGGA-CuGCGAGGCcGGGCGg -3' miRNA: 3'- -UGa---UCUCUCCUaGuCGCUUCG-CCUGC- -5' |
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24475 | 3' | -53.6 | NC_005264.1 | + | 54354 | 1.09 | 0.005024 |
Target: 5'- cACUAGAGAGGAUCAGCGAAGCGGACGa -3' miRNA: 3'- -UGAUCUCUCCUAGUCGCUUCGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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