miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 107143 0.66 0.897825
Target:  5'- gGCGGCgAGCUgaGCUAcguguUCaUCCCCAa -3'
miRNA:   3'- aCGCCG-UUGAggCGAUu----AG-AGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 156293 0.66 0.897825
Target:  5'- cGCGGUgAACU-CGCagGGUCUCCCgUACg -3'
miRNA:   3'- aCGCCG-UUGAgGCGa-UUAGAGGG-GUG- -5'
24475 5' -55.8 NC_005264.1 + 106530 0.66 0.897825
Target:  5'- gGCGGCAGCgcggCCGCggagUUUUUCGCg -3'
miRNA:   3'- aCGCCGUUGa---GGCGauuaGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 157944 0.66 0.89717
Target:  5'- gGCGGCcagcguggccucgAACUCCGCgugucgCUUgCCGCc -3'
miRNA:   3'- aCGCCG-------------UUGAGGCGauua--GAGgGGUG- -5'
24475 5' -55.8 NC_005264.1 + 44 0.66 0.891178
Target:  5'- -aCGGCGAguCUCCGUaaacUGuUCUCcCCCACg -3'
miRNA:   3'- acGCCGUU--GAGGCG----AUuAGAG-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 27852 0.66 0.891178
Target:  5'- cGCGGCGGCaUCCGCccAAUgcgCCgCCGCc -3'
miRNA:   3'- aCGCCGUUG-AGGCGa-UUAga-GG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 119071 0.66 0.891178
Target:  5'- -aCGGCGAguCUCCGUaaacUGuUCUCcCCCACg -3'
miRNA:   3'- acGCCGUU--GAGGCG----AUuAGAG-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 93083 0.66 0.891178
Target:  5'- cGCGGCGAcCUCgGCUucucagCUCgCCgACa -3'
miRNA:   3'- aCGCCGUU-GAGgCGAuua---GAG-GGgUG- -5'
24475 5' -55.8 NC_005264.1 + 65333 0.66 0.889821
Target:  5'- cGCGGCAGCUCCugGC-AAUCUaucauguuguaCCGCu -3'
miRNA:   3'- aCGCCGUUGAGG--CGaUUAGAgg---------GGUG- -5'
24475 5' -55.8 NC_005264.1 + 130282 0.66 0.889138
Target:  5'- uUGCGGCGGCUaCCGCggcagccacaUCCACa -3'
miRNA:   3'- -ACGCCGUUGA-GGCGauuagag---GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 122572 0.67 0.8843
Target:  5'- cGCGGCGGCgUCCaGC--AUCUCUcgugCCACu -3'
miRNA:   3'- aCGCCGUUG-AGG-CGauUAGAGG----GGUG- -5'
24475 5' -55.8 NC_005264.1 + 3545 0.67 0.8843
Target:  5'- cGCGGCGGCgUCCaGC--AUCUCUcgugCCACu -3'
miRNA:   3'- aCGCCGUUG-AGG-CGauUAGAGG----GGUG- -5'
24475 5' -55.8 NC_005264.1 + 68298 0.67 0.8843
Target:  5'- aGCGGCAuuucucaguGCggcgCCGCUGccCU-CCCACg -3'
miRNA:   3'- aCGCCGU---------UGa---GGCGAUuaGAgGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 84133 0.67 0.8843
Target:  5'- cGCGGCAGCUC-GCgag---CCCCGg -3'
miRNA:   3'- aCGCCGUUGAGgCGauuagaGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 132427 0.67 0.8843
Target:  5'- cGCGGCuguACaaCGCUAcgCUCgCCgGCg -3'
miRNA:   3'- aCGCCGu--UGagGCGAUuaGAG-GGgUG- -5'
24475 5' -55.8 NC_005264.1 + 5533 0.67 0.882897
Target:  5'- cGCGGCGuCUCgCGCggagcggguuUCUCUUCGCa -3'
miRNA:   3'- aCGCCGUuGAG-GCGauu-------AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 86096 0.67 0.877196
Target:  5'- aGCGGCGAgUUCGCacccacgcUUCCCCAa -3'
miRNA:   3'- aCGCCGUUgAGGCGauua----GAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 98540 0.67 0.877196
Target:  5'- aGCGGCAACgcgcugugggCCGCgauaCUCggcaCCCGCg -3'
miRNA:   3'- aCGCCGUUGa---------GGCGauuaGAG----GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 74464 0.67 0.86987
Target:  5'- aUGCGGCugg-CCGUgAAUCcuagCCCCAUg -3'
miRNA:   3'- -ACGCCGuugaGGCGaUUAGa---GGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 125464 0.67 0.862327
Target:  5'- cGCGGCGGCgUCGCUGGcggagaaCUCCUCGg -3'
miRNA:   3'- aCGCCGUUGaGGCGAUUa------GAGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.