Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24476 | 3' | -54.2 | NC_005264.1 | + | 119842 | 0.66 | 0.963754 |
Target: 5'- cCCGggGgGGGGGUUaaGGGg--GGGGg -3' miRNA: 3'- -GGCuuCgCCCUCAGgaCUCauaCCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 816 | 0.66 | 0.963754 |
Target: 5'- cCCGggGgGGGGGUUaaGGGg--GGGGg -3' miRNA: 3'- -GGCuuCgCCCUCAGgaCUCauaCCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 123210 | 0.67 | 0.923934 |
Target: 5'- -gGAAGCGGaGGGUCC-GAGggacgGGAGg -3' miRNA: 3'- ggCUUCGCC-CUCAGGaCUCaua--CCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 4183 | 0.67 | 0.923934 |
Target: 5'- -gGAAGCGGaGGGUCC-GAGggacgGGAGg -3' miRNA: 3'- ggCUUCGCC-CUCAGGaCUCaua--CCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 153440 | 0.68 | 0.906322 |
Target: 5'- -gGggGCGGGGGauugCCUgcGAGUGaGGAAu -3' miRNA: 3'- ggCuuCGCCCUCa---GGA--CUCAUaCCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 34413 | 0.68 | 0.906322 |
Target: 5'- -gGggGCGGGGGauugCCUgcGAGUGaGGAAu -3' miRNA: 3'- ggCuuCGCCCUCa---GGA--CUCAUaCCUU- -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 111549 | 0.73 | 0.628781 |
Target: 5'- aCGAGGCGGGAGUCUUGGGc------ -3' miRNA: 3'- gGCUUCGCCCUCAGGACUCauaccuu -5' |
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24476 | 3' | -54.2 | NC_005264.1 | + | 52044 | 1.08 | 0.004882 |
Target: 5'- cCCGAAGCGGGAGUCCUGAGUAUGGAAg -3' miRNA: 3'- -GGCUUCGCCCUCAGGACUCAUACCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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