miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 10160 0.65 0.996093
Target:  5'- ---cCGCGucCAGGGCCUCgGCgaguaucuugucgUCGGCa -3'
miRNA:   3'- gcaaGCGU--GUUUUGGAGgCGa------------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 80468 0.66 0.995709
Target:  5'- gGUggUGUGCgAAGugCUCCGCUUCGccGCc -3'
miRNA:   3'- gCAa-GCGUG-UUUugGAGGCGAAGC--CG- -5'
24476 5' -51.1 NC_005264.1 + 75785 0.66 0.995709
Target:  5'- uCGUUCGCGCuc-GCCUCCaggUCGucGCc -3'
miRNA:   3'- -GCAAGCGUGuuuUGGAGGcgaAGC--CG- -5'
24476 5' -51.1 NC_005264.1 + 18882 0.66 0.995709
Target:  5'- -uUUCGCACucauGggUCUCUccgGCUUgGGCu -3'
miRNA:   3'- gcAAGCGUGu---UuuGGAGG---CGAAgCCG- -5'
24476 5' -51.1 NC_005264.1 + 107593 0.66 0.995709
Target:  5'- aCGUgguacauagCGUACGcguuCUUCCGCUUCaGCg -3'
miRNA:   3'- -GCAa--------GCGUGUuuu-GGAGGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 51929 0.66 0.995709
Target:  5'- uCGUcCGCGCcGAGCUUggcgagggugCCGCUaacgcgucgugUCGGCg -3'
miRNA:   3'- -GCAaGCGUGuUUUGGA----------GGCGA-----------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 57996 0.66 0.995642
Target:  5'- gCGUUCGCAauaGGAGCUUUggggaguUGCUgaaUCGGUa -3'
miRNA:   3'- -GCAAGCGUg--UUUUGGAG-------GCGA---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157325 0.66 0.995001
Target:  5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3'
miRNA:   3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 82328 0.66 0.995001
Target:  5'- aCGUUgCGCACcgcggcGAugUUCuCGCUcUCGGCc -3'
miRNA:   3'- -GCAA-GCGUGu-----UUugGAG-GCGA-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 54172 0.66 0.995001
Target:  5'- ---gCGCACAccgccAACCU-CGCcUCGGCg -3'
miRNA:   3'- gcaaGCGUGUu----UUGGAgGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38298 0.66 0.995001
Target:  5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3'
miRNA:   3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 55360 0.66 0.995001
Target:  5'- -uUUgGC-CAuAGCCgggCCGCgUCGGCg -3'
miRNA:   3'- gcAAgCGuGUuUUGGa--GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 82557 0.66 0.9942
Target:  5'- gCGgcCGC-CucuuuAAUCUCCGCUgagCGGCc -3'
miRNA:   3'- -GCaaGCGuGuu---UUGGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 68452 0.66 0.9942
Target:  5'- gGUcugCGCGCGGAggGCCUCCaCUaauaUUGGCc -3'
miRNA:   3'- gCAa--GCGUGUUU--UGGAGGcGA----AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 141560 0.66 0.9942
Target:  5'- gCGUccccCGCugGAGauggcguuaccACCUCCGCggCGcGCa -3'
miRNA:   3'- -GCAa---GCGugUUU-----------UGGAGGCGaaGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 98523 0.66 0.9942
Target:  5'- ---aUGCGCGAcauguuucuGGCCUCUGCggaGGCa -3'
miRNA:   3'- gcaaGCGUGUU---------UUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 71851 0.66 0.9942
Target:  5'- aCGcgUCGCgGCGgcGGugUUCCGCgaCGGCa -3'
miRNA:   3'- -GCa-AGCG-UGU--UUugGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 61478 0.66 0.9942
Target:  5'- uCGUUCuaGCGCGccGAcgcGCC-CCGCggucUCGGCu -3'
miRNA:   3'- -GCAAG--CGUGU--UU---UGGaGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 42536 0.66 0.993852
Target:  5'- gCGUggGCGCA--GCUUCCGCgcgucuucgcgcCGGCa -3'
miRNA:   3'- -GCAagCGUGUuuUGGAGGCGaa----------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 111570 0.66 0.993672
Target:  5'- uCGUgguaacgCGCgACAGAugUUCCGCgauuccugaaccgCGGCg -3'
miRNA:   3'- -GCAa------GCG-UGUUUugGAGGCGaa-----------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.