miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 111570 0.66 0.993672
Target:  5'- uCGUgguaacgCGCgACAGAugUUCCGCgauuccugaaccgCGGCg -3'
miRNA:   3'- -GCAa------GCG-UGUUUugGAGGCGaa-----------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 74799 0.66 0.9933
Target:  5'- ---cCGUAUu-GACCUguaCGCUUCGGCc -3'
miRNA:   3'- gcaaGCGUGuuUUGGAg--GCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 76502 0.66 0.993009
Target:  5'- --gUCGgGgGGAauaggcgaccgucuACCgCCGCUUCGGCg -3'
miRNA:   3'- gcaAGCgUgUUU--------------UGGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 75785 0.66 0.995709
Target:  5'- uCGUUCGCGCuc-GCCUCCaggUCGucGCc -3'
miRNA:   3'- -GCAAGCGUGuuuUGGAGGcgaAGC--CG- -5'
24476 5' -51.1 NC_005264.1 + 112565 0.66 0.9933
Target:  5'- aGggCGUugGuGAUCUCCGCggccaUGGCg -3'
miRNA:   3'- gCaaGCGugUuUUGGAGGCGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 160252 0.66 0.992708
Target:  5'- gGUUCGCGCGGGuuaugcacggccacCCUCaugugaCGCUugUCGGCc -3'
miRNA:   3'- gCAAGCGUGUUUu-------------GGAG------GCGA--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 49425 0.66 0.992291
Target:  5'- gGUgcCGCACAugGAGCuCUCUGCcgUCGcGCa -3'
miRNA:   3'- gCAa-GCGUGU--UUUG-GAGGCGa-AGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 90650 0.66 0.9933
Target:  5'- aGggCGCGCgGAGACCgcaUUGCUggCGGCu -3'
miRNA:   3'- gCaaGCGUG-UUUUGGa--GGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 98523 0.66 0.9942
Target:  5'- ---aUGCGCGAcauguuucuGGCCUCUGCggaGGCa -3'
miRNA:   3'- gcaaGCGUGUU---------UUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 126574 0.67 0.985311
Target:  5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3'
miRNA:   3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 80995 0.67 0.986995
Target:  5'- ---aCGCcgACGugGCCUCCGCcUUGGUg -3'
miRNA:   3'- gcaaGCG--UGUuuUGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 4830 0.67 0.985311
Target:  5'- ---aUGCACGcGGGCCUCUGUUUCuagGGCg -3'
miRNA:   3'- gcaaGCGUGU-UUUGGAGGCGAAG---CCG- -5'
24476 5' -51.1 NC_005264.1 + 114368 0.67 0.985134
Target:  5'- ---aCGCGCGGGGCUacugaugUCCGCUUCGcCa -3'
miRNA:   3'- gcaaGCGUGUUUUGG-------AGGCGAAGCcG- -5'
24476 5' -51.1 NC_005264.1 + 106091 0.67 0.986995
Target:  5'- gCGUgcgUGC-CAAucucGGCCUCCGCggaaaGGCa -3'
miRNA:   3'- -GCAa--GCGuGUU----UUGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 157932 0.67 0.98634
Target:  5'- uCGUUCGCAUcuucgucgcucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu--------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 157390 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 100193 0.67 0.988525
Target:  5'- aGUUCGguCGcGugCUgCGCUUggaCGGCg -3'
miRNA:   3'- gCAAGCguGUuUugGAgGCGAA---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 42409 0.67 0.988525
Target:  5'- ---aUGCGCGAAGCUcgucccaaaaauUUCGCgUUCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGG------------AGGCG-AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 79710 0.67 0.989912
Target:  5'- ----aGgGCAGAcgcGCCUCCGCggccUUGGCg -3'
miRNA:   3'- gcaagCgUGUUU---UGGAGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 12620 0.67 0.991164
Target:  5'- uCGUcgcCGCGCAAGACUauaCCGCga-GGCc -3'
miRNA:   3'- -GCAa--GCGUGUUUUGGa--GGCGaagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.