miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 130439 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157932 0.67 0.98634
Target:  5'- uCGUUCGCAUcuucgucgcucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu--------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 4830 0.67 0.985311
Target:  5'- ---aUGCACGcGGGCCUCUGUUUCuagGGCg -3'
miRNA:   3'- gcaaGCGUGU-UUUGGAGGCGAAG---CCG- -5'
24476 5' -51.1 NC_005264.1 + 123236 0.67 0.985311
Target:  5'- gGUUUGcCACGcAAgCUUCGCUaggCGGCg -3'
miRNA:   3'- gCAAGC-GUGUuUUgGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 126574 0.67 0.985311
Target:  5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3'
miRNA:   3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 125260 0.67 0.991164
Target:  5'- --cUCgGCGCGAcuuguucuucGcCCUCCGCggCGGCg -3'
miRNA:   3'- gcaAG-CGUGUU----------UuGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 41391 0.67 0.986004
Target:  5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3'
miRNA:   3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 65649 0.67 0.985311
Target:  5'- uCGUccUCGUA--GAGCUugUCCGCcUCGGCg -3'
miRNA:   3'- -GCA--AGCGUguUUUGG--AGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 119500 0.67 0.988525
Target:  5'- uGgcUGCGCAGGGCgugCUCCGaggCGGCa -3'
miRNA:   3'- gCaaGCGUGUUUUG---GAGGCgaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 11412 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 9711 0.67 0.991164
Target:  5'- -uUUCGCGCcgcuGAGCCauugugcCCGCcgCGGCa -3'
miRNA:   3'- gcAAGCGUGu---UUUGGa------GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38363 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 15831 0.67 0.990429
Target:  5'- cCGUUCGCGCucguAAAguaguucuuccucguCCUCauccuCGuCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGu---UUU---------------GGAG-----GC-GAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 57432 0.67 0.989912
Target:  5'- ---gCGCGCGAAACggaaaaCUCCGC--CGGCu -3'
miRNA:   3'- gcaaGCGUGUUUUG------GAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 19054 0.67 0.988525
Target:  5'- gCGUUCGUgACuAAGCCcgCCGCgg-GGCa -3'
miRNA:   3'- -GCAAGCG-UGuUUUGGa-GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 47788 0.67 0.988525
Target:  5'- ---cUGCACgAAGACCUCgGCUUUcgccggGGCg -3'
miRNA:   3'- gcaaGCGUG-UUUUGGAGgCGAAG------CCG- -5'
24476 5' -51.1 NC_005264.1 + 122045 0.67 0.986995
Target:  5'- ---cCGCgGCAAGcGgCUCCGCUcUCGGCg -3'
miRNA:   3'- gcaaGCG-UGUUU-UgGAGGCGA-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 114368 0.67 0.985134
Target:  5'- ---aCGCGCGGGGCUacugaugUCCGCUUCGcCa -3'
miRNA:   3'- gcaaGCGUGUUUUGG-------AGGCGAAGCcG- -5'
24476 5' -51.1 NC_005264.1 + 49792 0.67 0.985311
Target:  5'- ----gGCACGGAcuACCUCCGCgucgaGGUg -3'
miRNA:   3'- gcaagCGUGUUU--UGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 154198 0.67 0.991164
Target:  5'- -cUUCGCGCGAAACgUagaCGUggCGGUg -3'
miRNA:   3'- gcAAGCGUGUUUUGgAg--GCGaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.