miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 52080 1.13 0.005285
Target:  5'- uCGUUCGCACAAAACCUCCGCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGUUUUGGAGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 8715 0.78 0.586814
Target:  5'- uGcgCGCGCGugGCCgCCGUUUCGGCu -3'
miRNA:   3'- gCaaGCGUGUuuUGGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 20616 0.75 0.755562
Target:  5'- aGUUCGUACAGAACCUaggggcacugggcgaCCGUUggCGGUc -3'
miRNA:   3'- gCAAGCGUGUUUUGGA---------------GGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 103969 0.75 0.761415
Target:  5'- gGUcaUCGCcuACGAAACCUCCGCcUUGaGCa -3'
miRNA:   3'- gCA--AGCG--UGUUUUGGAGGCGaAGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 35314 0.75 0.761415
Target:  5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3'
miRNA:   3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 154341 0.75 0.761415
Target:  5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3'
miRNA:   3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 98301 0.74 0.799231
Target:  5'- cCGUuaUCGCGgAAccccCCUCCGCggCGGCg -3'
miRNA:   3'- -GCA--AGCGUgUUuu--GGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 33596 0.74 0.808314
Target:  5'- uGUUCGgACGAGGCUUgCCGCcgcuaaagUUCGGCc -3'
miRNA:   3'- gCAAGCgUGUUUUGGA-GGCG--------AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 86752 0.74 0.808314
Target:  5'- uGUUCGCGCccguAGAGCCgucgaCGCUcgCGGCg -3'
miRNA:   3'- gCAAGCGUG----UUUUGGag---GCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 62667 0.74 0.81723
Target:  5'- aGUUCGC-CAAGA---UCGCUUCGGCg -3'
miRNA:   3'- gCAAGCGuGUUUUggaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 161364 0.73 0.825971
Target:  5'- aGUggGCACu--ACUUCCGCgaaUCGGCg -3'
miRNA:   3'- gCAagCGUGuuuUGGAGGCGa--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 117673 0.73 0.825971
Target:  5'- cCGUUCGCugccGCGcucuccuGCCUCCGCgucgUGGCg -3'
miRNA:   3'- -GCAAGCG----UGUuu-----UGGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 44516 0.73 0.834528
Target:  5'- gGUUCGCucGCGAugGACUuuucugCCGCUUCGGUc -3'
miRNA:   3'- gCAAGCG--UGUU--UUGGa-----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 99741 0.73 0.842892
Target:  5'- gCGUgCGCACGAGguagGCCuuUCCGCgaCGGCc -3'
miRNA:   3'- -GCAaGCGUGUUU----UGG--AGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 127808 0.73 0.846182
Target:  5'- aCG-UCGCGCGAgccAucucccgacagcguuGCCUCCGCggCGGCc -3'
miRNA:   3'- -GCaAGCGUGUU---U---------------UGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 111281 0.73 0.851057
Target:  5'- gGUUCGCACGu--CCaggCCGUgcUCGGCa -3'
miRNA:   3'- gCAAGCGUGUuuuGGa--GGCGa-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 29796 0.72 0.866757
Target:  5'- aCGUaggCGUugAuauGCUUCCGCcUCGGCg -3'
miRNA:   3'- -GCAa--GCGugUuu-UGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 46758 0.72 0.874281
Target:  5'- cCG-UCGCAgGAccaGAUCUUCGCUUgGGCg -3'
miRNA:   3'- -GCaAGCGUgUU---UUGGAGGCGAAgCCG- -5'
24476 5' -51.1 NC_005264.1 + 64297 0.72 0.881577
Target:  5'- uGUUCGCGuCcauGCCUCCGCagaGGCc -3'
miRNA:   3'- gCAAGCGU-GuuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 116382 0.72 0.895473
Target:  5'- cCG-UCGCGgGAGACCUCUuCgUCGGCu -3'
miRNA:   3'- -GCaAGCGUgUUUUGGAGGcGaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.