Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24476 | 5' | -51.1 | NC_005264.1 | + | 116382 | 0.72 | 0.895473 |
Target: 5'- cCG-UCGCGgGAGACCUCUuCgUCGGCu -3' miRNA: 3'- -GCaAGCGUgUUUUGGAGGcGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 126743 | 0.71 | 0.90653 |
Target: 5'- cCGUUCGCACcuguccgccaucccGuccucggaaacGGGCuCUCCGCgUCGGCa -3' miRNA: 3'- -GCAAGCGUG--------------U-----------UUUG-GAGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 4820 | 0.71 | 0.908409 |
Target: 5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3' miRNA: 3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 70247 | 0.71 | 0.908409 |
Target: 5'- ---gCGCAUcAAACCUgcCCGCgUCGGCg -3' miRNA: 3'- gcaaGCGUGuUUUGGA--GGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 48138 | 0.71 | 0.908409 |
Target: 5'- uCGaggCGCACGAGACCgcgcaaucCUGC-UCGGCg -3' miRNA: 3'- -GCaa-GCGUGUUUUGGa-------GGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 123846 | 0.71 | 0.908409 |
Target: 5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3' miRNA: 3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 84200 | 0.71 | 0.914509 |
Target: 5'- ----gGCACAGGGCCgCCGCggCGGUu -3' miRNA: 3'- gcaagCGUGUUUUGGaGGCGaaGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 61004 | 0.71 | 0.920362 |
Target: 5'- --cUCGUuCucuGCCUCgGCUUCGGCc -3' miRNA: 3'- gcaAGCGuGuuuUGGAGgCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 62219 | 0.71 | 0.925965 |
Target: 5'- aGggCGCGCu---CCgcggCCGCUUCGGg -3' miRNA: 3'- gCaaGCGUGuuuuGGa---GGCGAAGCCg -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 3970 | 0.71 | 0.925965 |
Target: 5'- uGUUCGggUAu-GCUguuagCCGCUUCGGCg -3' miRNA: 3'- gCAAGCguGUuuUGGa----GGCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 116238 | 0.71 | 0.931319 |
Target: 5'- cCGUccUCGCcccgcagggACAGAGCCUCCGCa-CGcGCg -3' miRNA: 3'- -GCA--AGCG---------UGUUUUGGAGGCGaaGC-CG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 146666 | 0.7 | 0.936423 |
Target: 5'- ---cCGCGaccGACCUCCGCgcagggCGGCa -3' miRNA: 3'- gcaaGCGUguuUUGGAGGCGaa----GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 5017 | 0.7 | 0.940805 |
Target: 5'- gGUUUGCGCAGAggagGCCacgagguUCCGCgucgUgGGCg -3' miRNA: 3'- gCAAGCGUGUUU----UGG-------AGGCGa---AgCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 33298 | 0.7 | 0.945888 |
Target: 5'- ---cCGCACAGGAC--CCGC-UCGGCg -3' miRNA: 3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 50250 | 0.7 | 0.945888 |
Target: 5'- aGUUUGUGC---ACCUgCCGCggCGGCg -3' miRNA: 3'- gCAAGCGUGuuuUGGA-GGCGaaGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 49905 | 0.7 | 0.945888 |
Target: 5'- gCGUUgCGCGCccAAAUC-CCGCUggCGGCg -3' miRNA: 3'- -GCAA-GCGUGu-UUUGGaGGCGAa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 150847 | 0.7 | 0.945888 |
Target: 5'- uCGUgacgCGUACucuGCCgugCCGCgcgCGGCa -3' miRNA: 3'- -GCAa---GCGUGuuuUGGa--GGCGaa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 152325 | 0.7 | 0.945888 |
Target: 5'- ---cCGCACAGGAC--CCGC-UCGGCg -3' miRNA: 3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 81746 | 0.7 | 0.945888 |
Target: 5'- aCGUUCGUgGCAAAcCCggCGCUcUCGGCa -3' miRNA: 3'- -GCAAGCG-UGUUUuGGagGCGA-AGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 87483 | 0.7 | 0.945888 |
Target: 5'- uCGUUCGCgGCAAAGCUUCucgagcauCGUUgCGGCu -3' miRNA: 3'- -GCAAGCG-UGUUUUGGAG--------GCGAaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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