miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 152325 0.7 0.945888
Target:  5'- ---cCGCACAGGAC--CCGC-UCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 58896 0.7 0.950253
Target:  5'- gCGUUCGCGCAuAgcggaugccGCCUCCuCgaUGGCg -3'
miRNA:   3'- -GCAAGCGUGUuU---------UGGAGGcGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 159673 0.69 0.958262
Target:  5'- cCGUcgCGCGCGGAGggUCgCCGUUUCGGUu -3'
miRNA:   3'- -GCAa-GCGUGUUUU--GGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 60675 0.69 0.958262
Target:  5'- --gUCGCGCAgcugggcucccaAGGCCUCCGCagaggUCaGCa -3'
miRNA:   3'- gcaAGCGUGU------------UUUGGAGGCGa----AGcCG- -5'
24476 5' -51.1 NC_005264.1 + 75681 0.69 0.968542
Target:  5'- gCGgagUCGCGCGcAGCg-CCGUcuUUCGGCg -3'
miRNA:   3'- -GCa--AGCGUGUuUUGgaGGCG--AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 83282 0.69 0.971529
Target:  5'- -uUUCGgcCGCAAGGCCUugCCGCggugCGGCc -3'
miRNA:   3'- gcAAGC--GUGUUUUGGA--GGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 65602 0.69 0.971529
Target:  5'- cCGgaaggUGCugAGAGagUUCUGCUUCGGCa -3'
miRNA:   3'- -GCaa---GCGugUUUUg-GAGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 88922 0.69 0.971529
Target:  5'- --gUCGCACucguCCUCCGUca-GGCa -3'
miRNA:   3'- gcaAGCGUGuuuuGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 2844 0.69 0.971529
Target:  5'- cCGgUCGCGCucgcGCCgucgcCCGCUgCGGCu -3'
miRNA:   3'- -GCaAGCGUGuuu-UGGa----GGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 121870 0.69 0.971529
Target:  5'- cCGgUCGCGCucgcGCCgucgcCCGCUgCGGCu -3'
miRNA:   3'- -GCaAGCGUGuuu-UGGa----GGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 49314 0.69 0.971529
Target:  5'- --cUCGUACAAgGACCUCCcgcgGCUguucgcgcUCGGCc -3'
miRNA:   3'- gcaAGCGUGUU-UUGGAGG----CGA--------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 22462 0.69 0.971529
Target:  5'- uGUaCGCGCAuauuGGGCgCUUCGC-UCGGCc -3'
miRNA:   3'- gCAaGCGUGU----UUUG-GAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 71350 0.69 0.971529
Target:  5'- ---cCGC-CGAAACC-CCGCagCGGCu -3'
miRNA:   3'- gcaaGCGuGUUUUGGaGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 95822 0.68 0.974305
Target:  5'- ---cUGCGCAAGGCCgCCGCUccguccaGGCa -3'
miRNA:   3'- gcaaGCGUGUUUUGGaGGCGAag-----CCG- -5'
24476 5' -51.1 NC_005264.1 + 18470 0.68 0.974305
Target:  5'- aCGUcccUCGC-CAAGAgagaCUCCGCccaguagaUUCGGCg -3'
miRNA:   3'- -GCA---AGCGuGUUUUg---GAGGCG--------AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 51805 0.68 0.974305
Target:  5'- aGUcCGCGC-GAGCCaCCGCUUCGa- -3'
miRNA:   3'- gCAaGCGUGuUUUGGaGGCGAAGCcg -5'
24476 5' -51.1 NC_005264.1 + 43321 0.68 0.974305
Target:  5'- uCGUUCGCG-AGGGCUgCCGCcUCGGa -3'
miRNA:   3'- -GCAAGCGUgUUUUGGaGGCGaAGCCg -5'
24476 5' -51.1 NC_005264.1 + 142568 0.68 0.97688
Target:  5'- ---gCGCGCAGAcgguccCCUCCGCga-GGCc -3'
miRNA:   3'- gcaaGCGUGUUUu-----GGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 7739 0.68 0.97688
Target:  5'- cCGUccUCGgaaACGGGcUCUCCGCgUCGGCa -3'
miRNA:   3'- -GCA--AGCg--UGUUUuGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 118043 0.68 0.97688
Target:  5'- gGUUUGC-CGcgGCgaCCGCggcgUCGGCa -3'
miRNA:   3'- gCAAGCGuGUuuUGgaGGCGa---AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.